CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9656 contig Csv1_Contig9656:213..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.135e-65
Identity = 122/219 (55.71%), Postives = 165/219 (75.34%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT--AGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K  L F+ETSAL++TNVE AF  +LTEI+ IV++K ++  +   +  GN    +   I VP       +    CC+
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGN----NVVDISVPPTTDGQKSNKLQCCQ 216          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 8.135e-65
Identity = 118/192 (61.46%), Postives = 156/192 (81.25%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLT--AGEGQGNGN 664
            G  + + DY+FKVVLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF TR++ +  K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++  +++++ RWL+ELR HAD NIVI+L+GNKSDL   RAVPT++A+ FA+K  L F+ETSAL++TNVE AF  +LTEI+ IV++K +   A   +  GN
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGN 193          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.037e-64
Identity = 119/181 (65.75%), Postives = 149/181 (82.32%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGE 646
            + + DY+FK+VLIGDS VGKS +L+RF RNEF+L+SK+TIGVEF T++L I  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++R  +F+   RWL+ELR H D NIV++LIGNKSDL     V TED K FA+KE L+F+ETSALEATNVENAF  VLT+I+ IV+K+ + AG+
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGD 187          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.037e-64
Identity = 122/213 (57.28%), Postives = 158/213 (74.18%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            +++ DY+FK+VLIGDS VGKS +L+RF +NEF+L+SK+TIGVEF T+T  ++ K VKAQIWDTAGQERYRA+TSAYYRGAVGA+L+YD++R  +F++  RWL ELR H D NIV++LIGNK DL    AV TE+AK FA++E L+F+ETSAL+ATNVENAF  VLT+I  IV+K+++      G G  A L GK   +         K   CC
Sbjct:    7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSV-----DGGGESADLPGKGETINVKEDGSVLKRMGCC 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 5.457e-61
Identity = 117/213 (54.93%), Postives = 149/213 (69.95%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKK----ILVPGPAQEIPAKSSMCC 742
            D +FK+VLIGDS VGKS +L+RF +NEF++DSK+TIGVEF TRTL I  K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDIS+  S+++   WL ELR +AD N+ + LIGNKSDL   RAVPTE++K FAQ+  L F ETSAL + NV+ AF  ++  I+  V+K  +  G+   NGN    S        L P P +   A  + CC
Sbjct:   11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 1.216e-60
Identity = 116/212 (54.72%), Postives = 156/212 (73.58%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL-TAGEGQGN-GNPASLSGKKI-LVPGPAQEIPAKSSMCC 742
            DY+FK+VLIGDS VGKS +L+RF  +EF+++SK+TIGVEF TRT+ +++K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDIS+  S+++   WL ELR +AD N+ + LIGNKSDL   RAVPT++AK FA +  + F ETSAL + NV+ AF  ++  IF +V+K  +  +G G  N G+  +  G  I L P P ++   KSS CC
Sbjct:   11 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSSNCC 222          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.537e-60
Identity = 112/212 (52.83%), Postives = 160/212 (75.47%), Query Frame = 2
Query:  107 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            ++ DY++K+VLIGDS VGKS +L+RF RNEFSL++K+TIGVEF TRT+  + K++KAQ+WDTAGQERYRA+TSAYYRGAVGA+LVYDI+++ ++  + RW+ ELR +AD+NI I+L+GNKSDL   R V T++AKEF++K  L F+ETSAL+++NVE AF  +LT+I++I+++ + + G           S  + ++     E PA  S CC
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTGP-----QTTIDSNTETIILPTTSEPPAAKSGCC 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.033e-60
Identity = 110/181 (60.77%), Postives = 149/181 (82.32%), Query Frame = 2
Query:   98 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTA 640
            D   + +Y+FK+V+IGDSAVGKS +L+R+ARNEFS +SKATIGVEFQT+++ I+ K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDI+RR +F+ + RWL+EL+ H+D  +  +L+GNK DLE  RAV  E+ K  A++EGLFF+ETSAL++TNV+ AF  V+ +I+N V++K L +
Sbjct:    4 DDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNS 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.107e-59
Identity = 108/181 (59.67%), Postives = 147/181 (81.22%), Query Frame = 2
Query:   98 DPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTA 640
            D  +  +Y+FK+V+IGDSAVGKS +L R+ARNEF+ +SKATIGVEFQT++++I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDI+R  +F+++ RWL+EL +H+D  +  +LIGNK DLE  RAV  E+ K  A+ EGLFF+ETSAL++TNV+ AF  V+ EI++ +++K L +
Sbjct:    4 DDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.535e-58
Identity = 118/211 (55.92%), Postives = 157/211 (74.41%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPA-QEI-PAKSSMCC 742
            ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   ++KAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+GNKSDL + R VPTE+A+ FA+  GL FLETSAL++TNVE AF TVL EIF  V+K+       Q N    +++    L  GPA QE+ P +   CC
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQR------QNNARTNAVT----LGSGPAGQELGPGEKRACC 210          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_DISOM8.135e-6555.71Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN8.135e-6561.46Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11E_LOTJA4.037e-6465.75Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH4.037e-6457.28Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT31_YEAST5.457e-6154.93GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
YPT32_YEAST1.216e-6054.72GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RB11A_DICDI3.537e-6052.83Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
ARA1_ARATH6.033e-6060.77Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
ARA4_ARATH5.107e-5959.67Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB25_BOVIN2.535e-5855.92Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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