CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9656 contig Csv1_Contig9656:213..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.310e-58
Identity = 113/200 (56.50%), Postives = 153/200 (76.50%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQE 715
            ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+GNKSDL + R VPTE+A+ FA+  GL FLETSAL++TNVE AF TVL EIF  V+K+   +         ++ +G++   PGP Q+
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNSPRSNAIALGSAQAGQE---PGPGQK 206          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.632e-58
Identity = 112/192 (58.33%), Postives = 146/192 (76.04%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN--------LTAGEGQGNGNP 667
            ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+GNKSDL + R VPTE+A+ FA+  GL FLETSAL++TNVE AF TVL EIF  V+K+         +T G  Q    P
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNSIRTNAITLGSAQAGQEP 201          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.258e-57
Identity = 112/196 (57.14%), Postives = 148/196 (75.51%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKN--------LTAGEGQGNGNP 667
            ++  ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+++ Q++  + RWL+EL  HA+  IV++L+GNKSDL + R VPTE+A  FA+  GL FLETSAL++TNVE AF TVL EIF  V+K+         +T G  Q   +P
Sbjct:    6 DEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSAITLGNAQAGQDP 201          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.008e-55
Identity = 109/220 (49.55%), Postives = 156/220 (70.91%), Query Frame = 2
Query:  107 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPA--------KSSMCC 742
            ++ +Y+FK+V+IGDSAVGKS +L RF RNEF+  +KATIGV+F T+++ I +K++ AQ WDTAGQER+RAVTS YYRGAVGAM+VYDI+ + SF ++TRWL ELR  A+++I+I+++GNKSDLE  R VPT++A+ FA+   + FLETSAL +TNV  +F  +LT+I+++V+ K     +   N    +   K   +  PA ++ A        K S CC
Sbjct:    5 EEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQLTANTTSTHQEKKSGCC 224          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.791e-49
Identity = 102/217 (47.00%), Postives = 138/217 (63.59%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI--------FNIVNKK-NLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R HA+ N+ I+LIGNK DL  +RAV TE+ ++FA++ GL FLETSA  A NVE AF+    EI        F++ N+   +  G G GN  P ++         P +   AKSS CC
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVK--------PGEGGAAKSSSCC 213          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.821e-48
Identity = 101/217 (46.54%), Postives = 136/217 (62.67%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEI--------FNIVNKK-NLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+  WLE+ R HA+ N+ I+LIGNK DL  +RAV TE+ ++FA++ GL FLETSA  A NVE AF+    EI        F++ N+   +  G G GN  P +          P +    KSS CC
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAK--------PGEGDARKSSSCC 213          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.485e-47
Identity = 88/183 (48.09%), Postives = 134/183 (73.22%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGN 664
            DY+ K+V+IGDS VGKS +L+R+ +NEFS+   +TIGVEF T+TL I +K +K Q+WDTAGQE+Y ++T +YY+GA+GA++VY+I+ R SF+++ +WL++ R +A ++  I+L+GNKSDL+E R V T + K+FA+K  + F+ETSAL++ NVE AF  +   I+  + K      +   NGN
Sbjct:    9 DYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFKNKTMTLDINNNGN 191          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.991e-47
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 625
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+T WLE+ R H++ N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A+NVE AF+    EI+  + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.991e-47
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 625
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+T WLE+ R H++ N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A+NVE AF+    EI+  + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.991e-47
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 625
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+T WLE+ R H++ N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A+NVE AF+    EI+  + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_RABIT3.310e-5856.50Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN9.632e-5858.33Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_MOUSE1.258e-5757.14Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RB11C_DICDI2.008e-5549.55Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
YPTC4_CHLRE4.791e-4947.00GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPTV4_VOLCA1.821e-4846.54GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RB11B_DICDI4.485e-4748.09Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB2A_RABIT9.991e-4752.07Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB9.991e-4752.07Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE9.991e-4752.07Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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