CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9656 contig Csv1_Contig9656:213..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.704e-46
Identity = 92/173 (53.18%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL 634
            +Y+FK ++IGD  VGKS +L +F  N+F  DS  TIGVEF TR + + +K +K QIWDTAGQER+RAVT +YYRGA GA+LVYDI+RR +++H+T WL + R+  + N VI+LIGNK DLE QR V  E+A  FA++ GL F+E+SA    NVE AF+     IF  V + N+
Sbjct:    6 EYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNV 178          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.704e-46
Identity = 95/202 (47.03%), Postives = 134/202 (66.34%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIV--NKKNLTAGEGQGNGNPASLSGKKIL-VPGPAQE 715
            Y+FK ++IGD  VGKS +L +F   +F  D   TIGVEF TR + +  + +K QIWDTAGQER+RAVT +YYRGA GA++VYDI+RR +++H++ WL + R+  + N VIILIGNK+DLE QR V  E+AK+FA++ GL FLE SA    NVE+AF+    +I+  +     +L A E      P++  G ++   P P +E
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQRE 211          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.226e-46
Identity = 88/164 (53.66%), Postives = 118/164 (71.95%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIF 610
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+T WLE+ R H++ N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A NVE AF+    EI+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIY 168          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.226e-46
Identity = 87/169 (51.48%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 625
            Y+FK ++IGD+ VGKS +L +F    F      T+GVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR +F+H+T WLE+ R H++ N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A+NVE AF+    EI+  + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.958e-46
Identity = 98/214 (45.79%), Postives = 144/214 (67.29%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAK-SSMCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL E+  +A +N+  +L+GNKSDL  +R V T+ AKEFA+  G+ FLETSA  A NVE AFM +  +I     KK +       N   A  +G K+    P Q++P+   S CC
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI-----KKRM------ANAPVAPKAGVKLT---PGQQVPSNGGSKCC 201          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.958e-46
Identity = 88/169 (52.07%), Postives = 120/169 (71.01%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNK 625
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+T WLE+ R H+  N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A NVE AF+    EI+  + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.958e-46
Identity = 92/188 (48.94%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNP 667
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ R+S+ ++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G   P
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASGGERP 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.476e-46
Identity = 95/207 (45.89%), Postives = 132/207 (63.77%), Query Frame = 2
Query:  119 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 739
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDI+RR++F+H+T WLE+ R H+  N+VI+LIGNKSDLE +R V  E+ + FA++ GL F+ETSA  A NVE A++    EI+  + ++ L     + NG          +  GP Q I +    C
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKI-QQGLFDVHNEANG----------IKIGPQQSITSSVGPC 200          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.458e-46
Identity = 95/213 (44.60%), Postives = 142/213 (66.67%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL E+  +A +N+  +L+GNKSDL  ++ V    AK FA + G+ FLETSA  ATNVE AFMT+  EI N +  + +            + +G  ++ P   + I +KSS CC
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPI-----------PTKAGGPVVRPQEGKPINSKSSSCC 203          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.443e-45
Identity = 97/215 (45.12%), Postives = 141/215 (65.58%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSS--MCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G    ++++          Q  P KSS   CC
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGATSGGSEKSNVN---------IQSTPVKSSGGGCC 202          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_DICDI1.704e-4653.18Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB14_CHICK1.704e-4647.03Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB2_LYMST2.226e-4653.66Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RAT2.226e-4651.48Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
YPT1_PHYIN4.958e-4645.79Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB2B_HUMAN4.958e-4652.07Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB1B_MACFA4.958e-4648.94Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB2B_MOUSE6.476e-4645.89Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
YPTC1_CHLRE8.458e-4644.60GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB1_DISOM1.443e-4545.12Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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