CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.443e-45
Identity = 92/188 (48.94%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNP 667
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R VTS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G   P
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASGGERP 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.443e-45
Identity = 91/188 (48.40%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNP 667
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G   P
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASGGERP 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.443e-45
Identity = 91/188 (48.40%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNP 667
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G   P
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASGGERP 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.443e-45
Identity = 91/188 (48.40%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNP 667
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G   P
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASGGERP 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.884e-45
Identity = 91/188 (48.40%), Postives = 131/188 (69.68%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNP 667
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G   P
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASGGERP 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.482e-45
Identity = 96/215 (44.65%), Postives = 143/215 (66.51%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 748
            + + DY+FK++LIGDS+VGKS  L RFA + +     +TIGV+F+ RT+ ++ K+VK QIWDTAGQER+R +TS+YYRGA G ++VYDI+  +SF+++ +WL+E+  +A+ ++  +L+GNK DL E RAV T  A+ +AQ+ G+ FLETSA E+ NVE AF+ +   I     KK+    +      P+++   K     P Q+   KSS CC T
Sbjct:    2 SNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAI-----KKSKAGSQAALERKPSNVVQMK---GRPIQQEQQKSSRCCST 208          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.482e-45
Identity = 97/212 (45.75%), Postives = 138/212 (65.09%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 739
            N    Y+FK++LIGDS VGKS +L RFA + +S    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ + +F+++ +WL+E+   A +N+  +L+GNKSDL  ++ V    AK FA    + FLETSA ++TNVE AFMT+ TEI     K  LTA +      P     K  +VPG +  I  KS  C
Sbjct:    2 NPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI-----KNRLTASQ------PTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.160e-45
Identity = 97/213 (45.54%), Postives = 140/213 (65.73%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL E+  +A +N+  +L+GNKSDL  ++ V  + AK FA + G+ FLETSA  ATNVE AFMT+  EI      KN  A +           G  ++ P   + I  KSS CC
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI------KNRMASQ-----PVPPKPGGPVVRPTEGKPINNKSSSCC 203          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.160e-45
Identity = 91/188 (48.40%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNP 667
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER R +TS+YYRGA G ++VYD++ ++S+ ++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKEFA   G+ FLETSA  ATNVE AFMT+  EI     KK +  G   G   P
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASGGERP 184          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.160e-45
Identity = 87/170 (51.18%), Postives = 127/170 (74.71%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFN 613
            N   DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNKSDL  ++ V    AKE+A + G+ FLETSA  ATNVE AFMT+  EI N
Sbjct:    5 NPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKN 174          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_RAT1.443e-4548.94Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB1.443e-4548.40Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN1.443e-4548.40Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN1.443e-4548.40Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_MOUSE1.884e-4548.40Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
YPTM1_MAIZE5.482e-4544.65GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1A_DICDI5.482e-4545.75Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPTV1_VOLCA7.160e-4545.54GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1B_PIG7.160e-4548.40Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1A_LYMST7.160e-4551.18Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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