CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9656 contig Csv1_Contig9656:213..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 9.351e-45
Identity = 93/213 (43.66%), Postives = 139/213 (65.26%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT  ++ K+VK QIWDTAGQER+R +TS+YYRGA G ++VYD++ + SF+++ +WL+E+  +A + +  +L+GNKSD+ +++ V    AKEFA    + FLETSA ++TNVE AF+T+  +I            E  GN   AS + K  +  G    +   SS CC
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQI-----------KERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.221e-44
Identity = 94/215 (43.72%), Postives = 139/215 (64.65%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 748
            N + DY+FK++LIGDS VGKS +L RF+ + +     +TIGV+F+ RT+    K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++  +SF+++ +WL E+  +A  N+  +L+GNKSDL E RA+P E AK FA + G+ F+ETSA +ATNVE AFM +   I     K+ + +     N  P ++  +        Q +  K+  CC T
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASI-----KERMASQPAGNNARPPTVQIR-------GQPVAQKNG-CCST 203          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.221e-44
Identity = 99/215 (46.05%), Postives = 140/215 (65.12%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSS--MCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI     KK +  G   G    A  S  KI      Q  P K S   CC
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATAGG---AEKSNVKI------QSTPVKQSGGGCC 205          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.221e-44
Identity = 99/215 (46.05%), Postives = 140/215 (65.12%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSS--MCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI     KK +  G   G    A  S  KI      Q  P K S   CC
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATAGG---AEKSNVKI------QSTPVKQSGGGCC 205          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.221e-44
Identity = 99/215 (46.05%), Postives = 140/215 (65.12%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSS--MCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI     KK +  G   G    A  S  KI      Q  P K S   CC
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATAGG---AEKSNVKI------QSTPVKQSGGGCC 205          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.221e-44
Identity = 99/215 (46.05%), Postives = 140/215 (65.12%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSS--MCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL+E+  +A +N+  +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI     KK +  G   G    A  S  KI      Q  P K S   CC
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATAGG---AEKSNVKI------QSTPVKQSGGGCC 205          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.595e-44
Identity = 89/202 (44.06%), Postives = 145/202 (71.78%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNL--TAGEGQGNGNPASLSGKKILVPG 703
            N + DY+FK++LIG+S VGKS +L RF+ + ++ D  +TIGV+F+ +T+ +  K+VK QIWDTAGQER+R +TS+YYRG+ G ++VYD++ ++SF+ +  WL+E+  +A   ++ +L+GNK DL+++R V  + AKEFA    + FLETSAL++TNVE+AF+T+  +I   ++++NL  T  + +  GN  +L G+ +   G
Sbjct:    2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGN-VNLKGQSLTNTG 202          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.083e-44
Identity = 97/212 (45.75%), Postives = 138/212 (65.09%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 739
            N + DY+FK++LIGDS VGKS +L RFA + +     +TIGV+F+ RT+    K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ ++SF+++ +WL E+  +A +N+  +L+GNK DL E R V  E  K  A + G+ FLETSA +ATNVE AFMT+  EI      KN  A +      PA+ + K   V    Q +  +SS C
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEI------KNRMASQ------PATNASKPATVQMRGQPVAQQSSCC 201          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 3.553e-44
Identity = 99/215 (46.05%), Postives = 139/215 (64.65%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSS--MCC 742
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD++ + SF+++ +WL+E+  +A +N+  +L+GNK DL  ++ V    AKEFA   G+ FLETSA  ATNVE +FMT+  EI     KK +  G   G    A  S  KI      Q  P K S   CC
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATAGG---AEKSNVKI------QSTPVKQSGGGCC 205          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.641e-44
Identity = 84/188 (44.68%), Postives = 127/188 (67.55%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLS 679
            DY+FK++LIGDS VGK+ +L RF+ + F+    +TIG++F+ RT+ +  K +K QIWDTAGQER+R +T+AYYRGA+G MLVYDI+  +SFD+I  W+  +  HA  ++  +++GNK D+ ++R V  E  ++ A   G+ FLETSA  +TNVE AF T+  +I   +N+K +      G G P  ++
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRK-MNDSNSSGAGGPVKIT 192          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_SCHPO9.351e-4543.66GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RBD2A_ARATH1.221e-4443.72Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB1A_RAT1.221e-4446.05Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.221e-4446.05Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.221e-4446.05Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.221e-4446.05Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
YPT1_YEAST1.595e-4444.06GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RIC1_ORYSJ2.083e-4445.75Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1A_PIG3.553e-4446.05Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB8B_RAT4.641e-4444.68Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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