CK934052

Overview
NameCK934052
Unique NameCK934052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934052 vs. ExPASy Swiss-Prot
Match: RL27A_DROME (60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 2
Query:    5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250
            ++KF  P +N+DKLWS+V  +  A+  K+     P+ID+ +FGY+K+LG+G LP  +PV+VKAK  SK AE KIK+AGG  +L+A
Sbjct:   67 QHKFR-PEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149          
BLAST of CK934052 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250
            ++N    P VN+D+LW++VP + + K    N    P+I+V Q GY KVLGKG LP+  PV+++ + VS+ AE+KIK+AGG V L A
Sbjct:   64 MKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CK934052 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250
            ++N    P VN+D+LW+++P + + K    N    P+I+V Q GY KVLGKG LPE  PV+V+ + VS+ AE+KIK+AGG V L A
Sbjct:   64 MKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CK934052 vs. ExPASy Swiss-Prot
Match: RL27A_ERYGR (60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 2
Query:    8 NKFHCPIVNIDKLWSMVPQDVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250
            N F  P++N++KLWS++P + +    +  + D +P+ID+   GY KVLGKG +P+  P+VV+A+  SK AE+KI EAGG V L A
Sbjct:   66 NHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK-VPLVVRARWFSKEAERKITEAGGVVELVA 149          
BLAST of CK934052 vs. ExPASy Swiss-Prot
Match: RL27A_TRYBB (60S ribosomal protein L27a OS=Trypanosoma brucei brucei GN=RPL27A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   23 PIVNIDKLWSMVPQDVKAKASKDNV-PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250
            P +N+D L  ++ +D   KA K  V P+ID+   GY K+LG G L    P +VKA+ VSK A+KKI++AGGAVVL A
Sbjct:   71 PTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHL--QAPCIVKARWVSKLADKKIRKAGGAVVLQA 145          
The following BLAST results are available for this feature:
BLAST of CK934052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27A_DROME1.765e-1449.4160S ribosomal protein L27a OS=Drosophila melanogas... [more]
RL28B_SCHPO3.932e-1446.5160S ribosomal protein L28-B OS=Schizosaccharomyces... [more]
RL28A_SCHPO3.932e-1447.6760S ribosomal protein L28-A OS=Schizosaccharomyces... [more]
RL27A_ERYGR6.707e-1445.8860S ribosomal protein L27a OS=Erysiphe graminis su... [more]
RL27A_TRYBB5.314e-1149.3560S ribosomal protein L27a OS=Trypanosoma brucei b... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934052 ID=CK934052; Name=CK934052; organism=Citrus sinensis; type=EST; length=449bp
ACTCCGCAACAAATTCCACTGCCCCATCGTCAACATCGACAAGCTCTGGT
CCATGGTCCCACAAGATGTGAAAGCAAAGGCCAGCAAGGACAATGTTCCG
ATGATTGATGTCACTCAGTTCGGCTACTTTAAGGTTTTGGGCAAAGGTGT
TTTGCCGGAGAACCAGCCCGTCGTTGTCAAGGCCAAGCTCGTTTCTAAGA
CCGCTGAGAAGAAGATCAAGGAGGCTGGTGGCGCTGTTGTGCTCACAGCT
TAGGGTTATTTTGGTAACTCTCCCTTGTCTAGGGATTTTGTTTTATTCTG
GGATCTGTTGAGACTTATTTAAATCACAATGTTTTTATCTTTTTTTTTGG
GTATATCTCTCGCTTAATGATTAAATGTGACCTGAATCTCATTTTATTTG
ACTTCTTGGTGCATTTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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