CK934057

Overview
NameCK934057
Unique NameCK934057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934057_ssr137 microsatellite CK934057_ssr137:137..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:18..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_TRIEI (Transaldolase OS=Trichodesmium erythraeum (strain IMS101) GN=tal PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.023e-40
Identity = 88/198 (44.44%), Postives = 126/198 (63.64%), Query Frame = 3
Query:  327 EQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGL--SDLSRVYSVASFFVSR 902
            E  GQS W DNL R + +   L  +I   G+RG+TSNPAIF+KAI+ +  Y+      +++ K +   Y  LV KDI+DAC +F  +Y+ET G DGY+S+EV P +A DT+ T+  A   +  + R N+ IKIP T   +P++  VIS+GI+VNVTL+FS+  Y     AY++GLEA      D+ ++ SVASFF+SR
Sbjct:   10 ENLGQSIWMDNLSRNIIESGELKSMIGKKGIRGITSNPAIFEKAIAGNAIYDADIEAGIKASKSVIEIYESLVFKDIRDACDIFMPVYEETKGLDGYISIEVPPTIAKDTESTISEAIRYYTAIGRENLMIKIPGTPEGLPAVTRVISEGINVNVTLLFSVESYINTAWAYIEGLEARAAKGEDIDKIASVASFFLSR 207          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_SACEN (Transaldolase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tal PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.023e-40
Identity = 98/195 (50.26%), Postives = 131/195 (67.18%), Query Frame = 3
Query:  336 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLS--DLSRVYSVASFFVSR 902
            G S W D+L R   +   L  LI+   V GVTSNP IF KA+S++  Y+ Q REL   G  ++ A  EL  +DI++A  +F +IY+   G DG VS+EV PRLA DT+ TV  A  L K V+RPN+ +KIPAT   +P+I  V+++G+SVNVTLIFS+ RY +V+DAYL GLE +  +  DL+R+ SVASFFVSR
Sbjct:   14 GVSIWLDDLSRKRINSGNLAELISDYAVVGVTSNPTIFAKALSNAADYDEQVRELAARGASVDDAVRELTTRDIREAADIFRNIYEA--GHDGRVSLEVDPRLAHDTERTVAEALDLWKAVDRPNLMVKIPATVEGLPAITRVLAEGVSVNVTLIFSVERYRDVMDAYLAGLEQAKANGHDLARIASVASFFVSR 206          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 95/195 (48.72%), Postives = 128/195 (65.64%), Query Frame = 3
Query:  336 GQSPWYDNLCRP---VTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEAS--GLSDLSRVYSVASFFVSR 902
            G S W D++ R      +L  LI    V GVT+NP IF KAI  S  Y +Q R+L   G D+  A   L   D++ AC +   ++D T+G DG VS+EV PRLA DT+ T+  A+ L  +V+RPN++IKIPAT   +P+I + +++GISVNVTLIFS+ RYE+VIDA+ DG+E +     DLSR+ SVASFFVSR
Sbjct:   12 GVSIWIDDISRDRLQTGNLAALIRDRHVVGVTTNPTIFGKAIEGSARYQDQLRDLAVRGVDVNEALRALTAYDVRWACDVTRPVFDATDGVDGRVSIEVDPRLAHDTEATIAEARALWWLVDRPNLFIKIPATVEGLPAIAQCLAEGISVNVTLIFSVKRYEQVIDAFFDGVERAIEAGHDLSRLASVASFFVSR 206          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL1_STRCO (Transaldolase 1 OS=Streptomyces coelicolor GN=tal1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 99/197 (50.25%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  333 EGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE---ASGLSDLSRVYSVASFFVSR 902
            +G S W D+L R   +   L  LI +  V GVT+NP+IFQ AI S   Y  Q  +L   G  ++ A   +   D++ A  +   +YD + G DG VS+EV PRLA DT  TV  A+ L  +V+RPNV IKIPAT   +P+I EVI  GISVNVTLIFSL RY EV+DAYL GLE   A+G+ DL+ ++SVASFFVSR
Sbjct:   20 QGVSVWLDDLSRRRIESGNLAELIRTKNVVGVTTNPSIFQAAIGSGEGYEEQLADLATRGVTVDEAVRMMTTADVRAAADVLRGVYDASGGRDGRVSIEVDPRLAHDTAATVAEARQLSWLVDRPNVMIKIPATKAGLPAITEVIGAGISVNVTLIFSLERYREVMDAYLAGLEKAQAAGI-DLAGIHSVASFFVSR 215          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_MYCPA (Transaldolase OS=Mycobacterium paratuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.450e-40
Identity = 93/195 (47.69%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  336 GQSPWYDNLCRPVT---DLLPLIASG-VRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLEASGLS--DLSRVYSVASFFVSR 902
            G S W D+L R      +L  LI +  V GVT+NP+IFQKA +  +AY++Q  EL   G D++A    +   D+++AC +    ++ ++G DG VS+EV PRLA DT  T+  A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS+ RY  V+DAYL G+E +  +  DLS+++SVASFFVSR
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKCVVGVTTNPSIFQKAFAEGHAYDSQIAELAARGADVDATIRTVTTDDVRNACDVLTREWENSDGVDGRVSIEVDPRLAGDTDKTIAQAVELWKIVDRPNLFIKIPATQAGLPAITAVLAEGISVNVTLIFSVERYRAVMDAYLAGMEKAREAGHDLSKIHSVASFFVSR 209          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.237e-39
Identity = 94/196 (47.96%), Postives = 130/196 (66.33%), Query Frame = 3
Query:  336 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE---ASGLSDLSRVYSVASFFVSR 902
            G + W D++ R      +L  L+ + GV GVTSNP IFQKAISSS+ Y+ Q  +L   G D+  A   +   D++DAC +   +YD + G DG VS+EV PRLA + + T+  A+ L  +V+RPN++IKIPAT   + +I E ++QGISVNVTLIF L RY+ VIDA++ GLE   A+G  D++ + SVASFFVSR
Sbjct:   12 GVAVWLDDISRDRLRTGNLAHLVENRGVVGVTSNPTIFQKAISSSDLYDEQLHDLAIRGVDVGEAVRAITAADVRDACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTLAEARALWWLVDRPNLFIKIPATRAGLSAITETLAQGISVNVTLIFGLDRYDAVIDAFMTGLEKALAAG-RDITDLASVASFFVSR 206          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_FRASN (Transaldolase OS=Frankia sp. (strain EAN1pec) GN=tal PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.921e-39
Identity = 97/196 (49.49%), Postives = 125/196 (63.78%), Query Frame = 3
Query:  336 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE---ASGLSDLSRVYSVASFFVSR 902
            G + W D++ R      +L  L  +  V GVTSNP IFQKAI     YN Q R+L   G D+  A   +   DI+DAC +    YD + G DG VS+EV PRLA +T+ TV  A+ L   V+RPN++IKIPAT   +P+I   ++QGISVNVTLIF+L RYE V+DA++ GLE   A+G  D+S V SVASFFVSR
Sbjct:   12 GVAVWLDDISRERIRTGNLAELARTRSVVGVTSNPTIFQKAIGGGETYNEQLRDLAVRGVDVGEAVRAITAADIRDACDILRPAYDASAGVDGRVSLEVDPRLAHETERTVAEARALWWSVDRPNLFIKIPATKSGLPAITATLAQGISVNVTLIFALDRYEAVMDAFMTGLEQALAAG-RDISDVASVASFFVSR 206          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_MYCUA (Transaldolase OS=Mycobacterium ulcerans (strain Agy99) GN=tal PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.815e-39
Identity = 92/195 (47.18%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  336 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE--ASGLSDLSRVYSVASFFVSR 902
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC +    ++ + G DG VS+EV PRLA +T  T++ A  L K+V+RPN+ IKIPAT   +P+I  V+++GISVNVTLIFS+ R+  V+DAYL G+E  A    DLS+++SVASFFVSR
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLAHETDKTIQQAVELWKIVDRPNLLIKIPATKAGLPAIAAVLAEGISVNVTLIFSVDRHRGVMDAYLTGMEKAAQAGHDLSKIHSVASFFVSR 209          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_MYCMM (Transaldolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tal PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.815e-39
Identity = 92/195 (47.18%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  336 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE--ASGLSDLSRVYSVASFFVSR 902
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC +    ++ + G DG VS+EV PRLA +T  T++ A  L K+V+RPN+ IKIPAT   +P+I  V+++GISVNVTLIFS+ R+  V+DAYL G+E  A    DLS+++SVASFFVSR
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLAHETDKTIQQAVELWKIVDRPNLLIKIPATKAGLPAIAAVLAEGISVNVTLIFSVDRHRGVMDAYLTGMEKAAQAGHDLSKIHSVASFFVSR 209          
BLAST of CK934057 vs. ExPASy Swiss-Prot
Match: TAL_MYCLE (Transaldolase OS=Mycobacterium leprae GN=tal PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.499e-39
Identity = 91/195 (46.67%), Postives = 128/195 (65.64%), Query Frame = 3
Query:  336 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNNQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFSLARYEEVIDAYLDGLE--ASGLSDLSRVYSVASFFVSR 902
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC +    ++ ++G DG VS+EV PRLA DT  T+  A  L ++V+ PN++IKIPAT   +P+I  V+++GISVNVTLIFS+ R+ EVIDAYL G+E  A    DLS++ SVASFFVSR
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQAVELWRIVDHPNLFIKIPATKAGLPAITAVLAEGISVNVTLIFSVQRHREVIDAYLAGIEKAAEAGRDLSKIVSVASFFVSR 211          
The following BLAST results are available for this feature:
BLAST of CK934057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_TRIEI2.023e-4044.44Transaldolase OS=Trichodesmium erythraeum (strain ... [more]
TAL_SACEN2.023e-4050.26Transaldolase OS=Saccharopolyspora erythraea (stra... [more]
TAL_ACIC12.642e-4048.72Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL1_STRCO2.642e-4050.25Transaldolase 1 OS=Streptomyces coelicolor GN=tal1... [more]
TAL_MYCPA3.450e-4047.69Transaldolase OS=Mycobacterium paratuberculosis GN... [more]
TAL_FRASC2.237e-3947.96Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]
TAL_FRASN2.921e-3949.49Transaldolase OS=Frankia sp. (strain EAN1pec) GN=t... [more]
TAL_MYCUA3.815e-3947.18Transaldolase OS=Mycobacterium ulcerans (strain Ag... [more]
TAL_MYCMM3.815e-3947.18Transaldolase OS=Mycobacterium marinum (strain ATC... [more]
TAL_MYCLE8.499e-3946.67Transaldolase OS=Mycobacterium leprae GN=tal PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934057 ID=CK934057; Name=CK934057; organism=Citrus sinensis; type=EST; length=903bp
GGGGGTACTTGGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTGAGTTT
TTAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAGCTTAC
AAATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCT
CACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCA
AAAGTTGCGTCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGC
CTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAA
AGAGGACAACTCTTCACGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGG
TATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAG
TGGTGTTAGGGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATAT
CTTCATCGAATGCTTACAATAATCAATTTAGGGAACTTGTACAATCTGGA
AAAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGA
TGCATGCAAACTTTTTGAGTCAATCTATGATGAAACCAATGGCGGTGATG
GCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGG
ACTGTGGAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGT
ATACATAAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAG
TTATTTCGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCCTGGCT
AGATATGAAGAAGTCATTGATGCTTACTTGGATGGCCTTGAGGCTTCTGG
GCTGAGTGACCTTTCCAGAGTTTACAGTGTTGCATCCTTTTTCGTTAGTC
GAG
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