CK934058

Overview
NameCK934058
Unique NameCK934058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:5..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 8.329e-78
Identity = 148/247 (59.92%), Postives = 176/247 (71.26%), Query Frame = 1
Query:  106 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAT 843
            KFFVGGNWKCNGT E + K+VS LN A                      KS L     V+AQN W+ KGGAFTGE+SAE LV++   WVILGHSERR ++ E ++F+G K AYALSQ LKV+AC+GE LE RE+G T  V  +Q KA A+ I++W NVV+AYEPVWAIGTGKVA+P QAQEVHA +R WLK NVSA+VA++ RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S T
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQV--KSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVT 292          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.330e-75
Identity = 146/265 (55.09%), Postives = 176/265 (66.42%), Query Frame = 1
Query:   52 SSRFHRQTKQNPIVVMARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAT 843
            SS  HR  +    +  + KFFVGGNWKCNGT + + K++S LN A                      KS L     ++ QN WV KGGAFTGE+S E L +L   WVILGHSERR ++ E ++F+G K AYALS+GL VIAC+GE LE RE+G T  V   Q KA A+ + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+  RIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S T
Sbjct:   47 SSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQV--KSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVT 309          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.600e-75
Identity = 144/255 (56.47%), Postives = 176/255 (69.02%), Query Frame = 1
Query:   88 IVVMAR--KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAT 843
            +V MA   KFFVGGNWKCNGT + + K+VS LN A+                     KS L     ++ QN WV KGGAFTGE+S E L ++   WVILGHSERR ++ E + F+G K AYAL++GL VIAC+GE LE RE+G T  V  EQ KA A+ + +W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVA+  RIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ + T
Sbjct:   56 VVAMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQV--KSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVT 308          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 1.126e-74
Identity = 142/247 (57.49%), Postives = 173/247 (70.04%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            M RKF VGGNWK NG    +  +   L                         +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL++GLKVIAC+GETL+ RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK A+P QAQEVHA LRKW  +NVSA+V+A+ RI YGGSV  ANC+ELAA+PD+DGFLVGGASLKPEFI I+ +
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLA--RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIVNA 245          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 1.126e-74
Identity = 143/246 (58.13%), Postives = 172/246 (69.92%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            +RKFFVGGNWK NG    + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L+ RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:    4 SRKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.470e-74
Identity = 143/246 (58.13%), Postives = 172/246 (69.92%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+ALS+GL VIAC+GE L+ RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:    3 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 246          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 279.256 bits (713), Expect = 1.920e-74
Identity = 142/246 (57.72%), Postives = 173/246 (70.33%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L+ RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:    4 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 2.508e-74
Identity = 142/246 (57.72%), Postives = 171/246 (69.51%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L+ RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:    4 SRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.508e-74
Identity = 142/246 (57.72%), Postives = 171/246 (69.51%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L+ RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:    4 SRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.275e-74
Identity = 142/246 (57.72%), Postives = 171/246 (69.51%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L+ RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:    4 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of CK934058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE8.329e-7859.92Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH1.330e-7555.09Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN6.600e-7556.47Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_CULTA1.126e-7457.49Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_BOVIN1.126e-7458.13Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_RABIT1.470e-7458.13Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_CANFA1.920e-7457.72Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_MACMU2.508e-7457.72Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA2.508e-7457.72Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_PONAB3.275e-7457.72Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934058 ID=CK934058; Name=CK934058; organism=Citrus sinensis; type=EST; length=844bp
GGGGACAAACAGGGTGTGAGAAAACAAACAGGGTGTTGATTTCTCGTATT
TTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGTCGTCATGG
CCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACATCTGAG
GAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTTCCTTCTGA
GGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGG
TCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAAATTGCTGG
GTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATGCTTGT
CAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAGAGCTC
TTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATGCACTT
TCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAATAGCG
AGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGCAATCG
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCNNNNAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAG
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