CK934058

Overview
NameCK934058
Unique NameCK934058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_CUPTR (Triosephosphate isomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 89/179 (49.72%), Postives = 107/179 (59.78%), Query Frame = 1
Query:  286 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            AQ+      GAFTGEV+A ML      +V++GHSERR    E++  V  K   AL  G+  + CVGETL  RE+G T AVV  Q +A+ E   +     VVLAYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   62 AQDVSAEARGAFTGEVAASMLGEFGCTYVLVGHSERRTYHGETDQAVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLEALTVEQLGRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAAR-DAGVAGRMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLKSE 239          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_BORDL (Triosephosphate isomerase OS=Borrelia duttonii (strain Ly) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 95/248 (38.31%), Postives = 130/248 (52.42%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLK-VIACVGETLE*RESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 831
            RK F+ GNWK + TS E   +   +                           V + ++  + AQN      GA T E++  ML+   + +VILGHSE R  L E+++ +  KV   L    K +I CVGETLE RE G T+ VV  Q +     +  S+   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A +  I YGGSVN  N + L  + D+DG L+GGASLK + F+ II
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDGVYNINNNVVVMVTPTFTSLCKVCRVTKGTNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGASLKADSFLKII 249          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 81/171 (47.37%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  313 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKIS--NWDN-VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            GA+TGE+SAE+L +  I +V++GHSERR LL +  + +  K+++AL+ G+ VI CVGE+LE RE G    +V +Q   IA  +S   W + +V+AYEP+WAIGTG+ A+P  AQ +HA++R+ L     A   +   ++YGGSV   N  ELAA PD++G LVGGASL  E
Sbjct:   83 GAYTGEISAELLTDSQIRYVLIGHSERRDLLGDHVEILKAKLSHALNAGMTVIYCVGESLEQREQGLAEQIVLQQICDIAPVVSAEQWQHQIVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQITPA--GSQIALLYGGSVKPENAVELAACPDINGALVGGASLNAE 251          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_MYCS5 (Triosephosphate isomerase OS=Mycoplasma synoviae (strain 53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 97/246 (39.43%), Postives = 136/246 (55.28%), Query Frame = 1
Query:  106 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 831
            K  + GNWK N T    K+ +                             + L+ +     +AAQN    + GA+TGEVSA+ML++L++ +VILGHSE+R    E+++ V  K   AL + L  I CVGETLE   +G T  VV  Q  A  + + +   V++AYEP+WAIGTGKVAT   AQ+V     K++K+  S +      + YGGSVN  N  EL++Q D+DGFLVGGASLK  +F D++
Sbjct:    3 KKLIVGNWKMNSTFSTTKEFLKEFQSLYSLNSKTYNQKATFAVATPFTNLAALKDNDLNLKLAAQNMSFYEKGAYTGEVSADMLLDLNVSYVILGHSEQRQYHAETDENVNKKARLALEKNLTPIVCVGETLEEYLAGKTKEVVKAQLAASLKDL-DVTKVIVAYEPIWAIGTGKVATAQIAQDV----CKYIKELTSKQTV----VQYGGSVNAKNIFELSSQEDIDGFLVGGASLKATDFSDLM 239          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_LEIXX (Triosephosphate isomerase OS=Leifsonia xyli subsp. xyli GN=tpiA PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.295e-35
Identity = 98/253 (38.74%), Postives = 129/253 (50.99%), Query Frame = 1
Query:   97 MARKFFVGGNWKCN----GTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 834
            M R   + GNWK N     +   V+K+  TL  A                        V      +A   Q+      GA+TGE++A  L  L   +VI+GHSERR L NE+++ V  K A A+  G+  I CVGET E  E     AV   Q +A    I +  + V+AYEPVWAIG+G+ ATP QA++V A LR  + + +  EVAA  RI+YGGSV   N      + +VDG LVGGASL   EF  II+
Sbjct:    1 MRRVPLIAGNWKMNLDHLQSIAVVQKLAWTLKDAGHDFGAVEVAVFPPFTDLRSVQTLVAADKLPIAFGGQDVSEHDSGAYTGEIAASFLAALEARYVIIGHSERRTLHNETDEQVAAKTAQAVKNGISPIVCVGETAEDLEKHGASAVPVAQLRAALAGIDSAADFVVAYEPVWAIGSGQAATPEQAEQVAAALRAVIAEALGDEVAAKTRILYGGSVKSGNIAGFMRETNVDGALVGGASLDVAEFAAIIR 253          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_BUCAP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.295e-35
Identity = 90/250 (36.00%), Postives = 132/250 (52.80%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTL-NQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK--DNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 834
            +K  +  NWK NG+ + +   ++ L +Q                       K +   + H+AAQN  V   GAFTGE SA M+ ++ + ++I+GHSERR L NE+N+ +  K     +  L  I C+GET   ++S  T  ++ EQ  +I        + N V+AYEP+W+IGTG  A P   Q +H  ++ ++K  D VSAE   +  + YGGSV   N      QPD+DG L+G ASLK  EF+ IIK
Sbjct:    2 KKKIIAANWKLNGSIKTISYFLTFLKSQISSFLKNNIIIIAPPTVFLERVYKDINSINIHLAAQNIDVNLTGAFTGENSALMMKDIGVKYIIIGHSERRLLHNENNEIIAKKFCLVKNLNLVPILCIGETEAEKKSNKTEKILKEQLNSIFNSFGEKAFRNAVIAYEPIWSIGTGVSADPKNVQLIHKFIKNYIKKYDIVSAE---NLIVQYGGSVTSLNAGNFLKQPDIDGLLIGSASLKHEEFLKIIK 248          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_BORRA (Triosephosphate isomerase OS=Borrelia recurrentis (strain A1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.295e-35
Identity = 94/248 (37.90%), Postives = 130/248 (52.42%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLK-VIACVGETLE*RESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 831
            RK F+ GNWK + TS E   +   +                           V + ++  + AQN      GA T E++  ML+   + +VILGHSE R  L E+++ +  KV   L    K +I CVGETLE RE G T+ VV  Q +     +  S+   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A +  I YGGSVN  N + L  + D+DG L+GG+SLK + F+ II
Sbjct:    2 RKVFLAGNWKMHYTSVEAADVAKQIVDGVYNINNNVVVMVTPTFTSLCKVCRVTKGTNVLLGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGSSLKADSFLKII 249          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_VIBCH (Triosephosphate isomerase OS=Vibrio cholerae GN=tpiA PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 96/252 (38.10%), Postives = 131/252 (51.98%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFH---VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            R+  V GNWK NG+   V  +++ LN AE                     + +++   +   + AQN      GA+TG++S  ML +     +I+GHSERR    ES++FV  K A+    GL  + C+GET    E+G T AV A Q  A+  A  +   +  ++AYEP+WAIGTGK AT   AQ +HA +R  +     A VA    I YGGSV   N     AQPD+DG LVGGASL  + F  I K+A
Sbjct:    2 RRPVVMGNWKLNGSKAMVTDLLNGLN-AELEGVEGVDVVVAPPAMYLDLAERLIKEGGNKLILGAQNTDTHNSGAYTGDMSPAMLKDFGASHIIIGHSERRDYHKESDEFVAKKFAFLKENGLTPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAIGTGKAATADDAQRIHASIRALIAAK-DAAVAEQVIIQYGGSVKPENAASYFAQPDIDGALVGGASLDAKGFAAIAKAA 251          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_METFK (Triosephosphate isomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 92/237 (38.82%), Postives = 123/237 (51.90%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 807
            R+  V GNWK NG   + K+++  L +                       K +  ++    AQN    + GA+TGEVSA ML      +VI+GHSER     ESN  + +K A A   G+  I CVGETL+ RESG     +A Q  A+         D  V+AYEPVWAIGT + ATP QA+  H+ +R+ +   +    A S RIIYGGSVN  N  +L + PD+DG L+G  SL
Sbjct:    2 RRKLVVGNWKMNGNLAQNKRLLEALVRGLQDVEHVDIAVCVPYPYLFQAQKILSGTNIAWGAQNVAKHENGAYTGEVSAAMLKEFGASYVIVGHSERSDAYCESNANIAEKFAIAKHYGITPIFCVGETLQERESGVMEYAIANQLDAVLSVSGGALLDQAVIAYEPVWAIGTNRTATPEQARAAHSFIRERIA-AMHPGAAESVRIIYGGSVNPRNAAQLLSMPDIDGGLIGRCSL 237          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 85/177 (48.02%), Postives = 111/177 (62.71%), Query Frame = 1
Query:  265 RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFL 789
            RS F VA         GA+TGEVSAE+L +  I +V++GHSERR    ES   +  K   AL+ GLKVI CVGE+LE RESG    VV +Q   +A  ++   W ++V+AYEP+WAIGTGK A+P  AQ +HA++R+ L    S    A+  I+YGGSV   N  ELAA PD++G L
Sbjct:   52 RSVFTVAQDVSRFGNMGAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGSVKAENAVELAACPDINGAL 226          
The following BLAST results are available for this feature:
BLAST of CK934058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CUPTR1.030e-3549.72Triosephosphate isomerase OS=Cupriavidus taiwanens... [more]
TPIS_BORDL1.030e-3538.31Triosephosphate isomerase OS=Borrelia duttonii (st... [more]
TPIS_ACIAD1.030e-3547.37Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]
TPIS_MYCS51.345e-3539.43Triosephosphate isomerase OS=Mycoplasma synoviae (... [more]
TPIS_LEIXX2.295e-3538.74Triosephosphate isomerase OS=Leifsonia xyli subsp.... [more]
TPIS_BUCAP2.295e-3536.00Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_BORRA2.295e-3537.90Triosephosphate isomerase OS=Borrelia recurrentis ... [more]
TPIS_VIBCH2.997e-3538.10Triosephosphate isomerase OS=Vibrio cholerae GN=tp... [more]
TPIS_METFK2.997e-3538.82Triosephosphate isomerase OS=Methylobacillus flage... [more]
TPIS3_RHIEC3.914e-3548.02Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934058 ID=CK934058; Name=CK934058; organism=Citrus sinensis; type=EST; length=844bp
GGGGACAAACAGGGTGTGAGAAAACAAACAGGGTGTTGATTTCTCGTATT
TTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGTCGTCATGG
CCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACATCTGAG
GAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTTCCTTCTGA
GGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGG
TCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAAATTGCTGG
GTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATGCTTGT
CAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAGAGCTC
TTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATGCACTT
TCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAATAGCG
AGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGCAATCG
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCNNNNAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAG
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