CK934058

Overview
NameCK934058
Unique NameCK934058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_DESVV (Triosephosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.139e-34
Identity = 80/182 (43.96%), Postives = 117/182 (64.29%), Query Frame = 1
Query:  274 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTK-AIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            F +  Q+ +    GA+TGE++  ML++    WV+ GHSERR +L E ++ V  K A++L  GL+V+ C+GE L+ RE+G    V+A Q +  +A+  + +   ++V+AYEPVWAIGTGKVA PA+  E HA +R  L+     +  A+ RI+YGGSV   N  EL +  +VDG LVGGASL+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQ 241          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_DESVH (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.139e-34
Identity = 80/182 (43.96%), Postives = 117/182 (64.29%), Query Frame = 1
Query:  274 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTK-AIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            F +  Q+ +    GA+TGE++  ML++    WV+ GHSERR +L E ++ V  K A++L  GL+V+ C+GE L+ RE+G    V+A Q +  +A+  + +   ++V+AYEPVWAIGTGKVA PA+  E HA +R  L+     +  A+ RI+YGGSV   N  EL +  +VDG LVGGASL+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQ 241          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_DESVM (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.487e-34
Identity = 79/184 (42.93%), Postives = 114/184 (61.96%), Query Frame = 1
Query:  274 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            + V  Q+ +    GA+TGE+S  ML++    WV+ GHSERR ++ ES++ VG K A++++ GLKV+ C+GET+E RE+G    V+  Q +     +        + +AYEPVWAIGTGKVA P +  E HA +R+ L      E   + RI+YGGSV   N +E+ A  +VDG LVGGASL+ +
Sbjct:   61 YSVGGQDVYPAAEGAYTGEISPGMLMDCGCAWVLTGHSERRHVIGESDELVGAKTAFSINAGLKVVLCIGETIEEREAGRLGEVLERQLETGLAGVKGDAVPAAIAVAYEPVWAIGTGKVAGPPEIVEAHALVRQLLVARF-GEGGVAVRILYGGSVKPENAREIIALDNVDGVLVGGASLQAD 243          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.943e-34
Identity = 93/249 (37.35%), Postives = 128/249 (51.41%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-----SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 831
            R   + GNWK + T  E ++ +  L  A                       +V+      SD  V AQN      GAFTGE+S  ML  L + +VI+GHSERR    E+++ V  ++A A   GL  I CVGE+ + RE G T + +  Q     + I + +N+V+AYEP+WAIGTG+     +A  V   +R+ L +       A   I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:    2 RPILIAGNWKMHKTQAEAREFLRELGLALRSSPSGSASQRQIILCVPFTDLAVVAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_RALEJ (Triosephosphate isomerase OS=Ralstonia eutropha (strain JMP134) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.943e-34
Identity = 87/179 (48.60%), Postives = 107/179 (59.78%), Query Frame = 1
Query:  286 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            AQ+      GAFTGEV+A ML      + ++GHSERR    ES+  V  K   AL  G+  + CVGETL  RE+G T  VV  Q +A  + +S      VVLAYEPVWAIGTGK A+  QAQ VHA LR  +++   A VA    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   60 AQDVSAEARGAFTGEVAASMLGEFGCTYALVGHSERRTYHGESDAVVAAKALRALEFGIIPVICVGETLAQREAGETEVVVGRQLQAALDALSVEQLGRVVLAYEPVWAIGTGKTASSEQAQAVHAFLRAEVRER-DAGVADRMAILYGGSVKPDNAAELFSMSDIDGGLIGGASLKSE 237          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_PROAC (Triosephosphate isomerase OS=Propionibacterium acnes GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.943e-34
Identity = 94/246 (38.21%), Postives = 123/246 (50.00%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVL------RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            M+R   + GNWK N        +V  L +A                      + V       +      AQ+      GA+TGEVS  ML  L   +V++GHSERR   NES++ V  K    +  G+  I C GE LE R++G  V     Q KA  + I       +V+AYEP+WAIGTG+ AT   AQEV   +R+ +K+   A  A + RI YGGSV  AN  E+ A+PDVDG LVGGASLK
Sbjct:    1 MSRTPIMAGNWKMNLDHVAATSLVQDLGEALKAAGYDSSKSEAVVIPPFTDIRPVAIIIDGDKLPIAYGAQDISAHDDGAYTGEVSGAMLSKLGCRYVVVGHSERREYHNESDELVNAKAKKVIENGMTPIICCGEALEVRKAGKHVEHTVGQIKADLDGIPAEQVAKLVIAYEPIWAIGTGETATADDAQEVCQAIREAVKELYDAPTAEAVRIQYGGSVKPANVAEIMAKPDVDGALVGGASLK 246          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.943e-34
Identity = 92/244 (37.70%), Postives = 125/244 (51.23%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVA-----AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQ-TKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            R   V GNWK NG     +  V T+ +                        S L  +  +A     AQ+      GA+TGEV A ML  +   +VI+GHSERR +  E+++ V  K   AL  G+  + CVGET + R SG    +V  Q  K ++       + ++AYEPVWAIGTGKVA+   AQ++H  +R  L +    +VA+   I+YGGSV   N  EL A PD+DG LVGGASL P+
Sbjct:    2 RPLIVIGNWKMNGNLASNQDWVKTVARGMESGMPAGRKFAVCPSFPYLSQCSTLIKEHSLAFLSLGAQDVSAHGAGAYTGEVGASMLKEMGCEYVIVGHSERRQMHQEADESVAAKALQALDSGMTPVICVGETADERNSGRAEEIVCSQVAKQVSVLQDRLADCLIAYEPVWAIGTGKVASAQVAQDMHRAIRMQLAE-FDEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLNPQ 244          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_AMOA5 (Triosephosphate isomerase OS=Amoebophilus asiaticus (strain 5a2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.943e-34
Identity = 89/254 (35.04%), Postives = 132/254 (51.97%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEE---VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKI-----SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 837
            ++  +  NWK N   +E   + K ++   QAE                             H+ AQNC  +  GAFTGEVSA ML ++ + +V++GHSERR    E ND +  K+   LS  L+ + C GE L  RES    A + +Q   IAE +          V++AYEP+WAIGTG + + A+ +E+   +R  LK   +  +A +  I+YGGS N +N  +L + P ++G L+GGASL   EFI I++S
Sbjct:    2 QRTIIAANWKMNKNFQEGLQLAKEITQFIQAEPLAGAQIILFPSFIHLEGISKLLTPEVKLHLGAQNCHDQIAGAFTGEVSAAMLASIDVRYVLVGHSERRQNFAEDNDLIAKKIDAILSCKLQPVFCCGEPLSVRESNQHYAFIEQQ---IAESLFHLTPDELQQVIIAYEPIWAIGTGLIPSLAEIEEMQQTIRNILKKQYNTVLADNMAILYGGSCNASNITKLISLPGINGVLIGGASLHFKEFIHILRS 252          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_STRMU (Triosephosphate isomerase OS=Streptococcus mutans GN=tpiA PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.314e-34
Identity = 89/252 (35.32%), Postives = 128/252 (50.79%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 834
            M+RK  + GNWK N T+ E ++ +  +                         K V  ++  VAAQNC+    GAFTGE S   L  L + +VI+GHSERR   +E++  +  K        +  I C GE+LE  E+G T   +  Q  A  + +S     ++V+AYEP+WAIGTGK A    A ++   +R  ++     EVA + RI YGGSV   N  E  A+ +VDG LVGGASL+ +     +D +K
Sbjct:    1 MSRKPIIAGNWKMNKTAAEAREFIDAVKNNIPSNNLVDTVIGSPALFLEGMKKGVKGTELQVAAQNCYWEDFGAFTGETSPAALAALGVDYVIIGHSERRDYFHETDQEINKKAHAIFKHKMTPILCCGESLETYEAGKTAEWIEGQITADLKGLSAEQVSSMVIAYEPIWAIGTGKSADANIADDICGVVRATVEKLYGKEVAQAVRIQYGGSVKPENVAEYMAKENVDGALVGGASLQADSFLALLDFVK 252          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.314e-34
Identity = 90/250 (36.00%), Postives = 132/250 (52.80%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTL-NQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 840
            R+  +  NWK N T  E +  ++ L  +                       +    S     AQN +    GA+TGEVSA ML+++     I+GHSERR L  E+++ V  K   A+  GL  + CVGET E R++G     V+ Q +A+ E +  ++   VV AYEP+WAIGTGK A+P  AQ+    +R  L++      A   R++YGGS+   N  E+ AQ DVDG LVGGASL+   F+ ++++A
Sbjct:    5 RRPLMAANWKMNKTVREAQDYMAALLPRVADLAGEVDVAVFAPFTCLSEVARMAEGSGVLAGAQNFFYEDSGAYTGEVSAPMLLDVGARASIVGHSERRELFCETDESVARKARRAVEAGLLPVVCVGETEEERDAGRMWEKVSGQVRAVVEGLGDASGGRVVFAYEPIWAIGTGKTASPEDAQDAIGRIRGLLRELRGEGFAEEARLLYGGSIKPENISEIMAQKDVDGGLVGGASLEVGSFLQLVEAA 254          
The following BLAST results are available for this feature:
BLAST of CK934058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DESVV1.139e-3443.96Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVH1.139e-3443.96Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVM1.487e-3442.93Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_SYNJB1.943e-3437.35Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_RALEJ1.943e-3448.60Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_PROAC1.943e-3438.21Triosephosphate isomerase OS=Propionibacterium acn... [more]
TPIS_POLSQ1.943e-3437.70Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_AMOA51.943e-3435.04Triosephosphate isomerase OS=Amoebophilus asiaticu... [more]
TPIS_STRMU3.314e-3435.32Triosephosphate isomerase OS=Streptococcus mutans ... [more]
TPIS_RUBXD3.314e-3436.00Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934058 ID=CK934058; Name=CK934058; organism=Citrus sinensis; type=EST; length=844bp
GGGGACAAACAGGGTGTGAGAAAACAAACAGGGTGTTGATTTCTCGTATT
TTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGTCGTCATGG
CCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACATCTGAG
GAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTTCCTTCTGA
GGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGG
TCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAAATTGCTGG
GTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATGCTTGT
CAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAGAGCTC
TTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATGCACTT
TCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAATAGCG
AGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGCAATCG
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCNNNNAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAG
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