CK934077

Overview
NameCK934077
Unique NameCK934077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3006 contig Csv1_Contig3006:502..1262. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 342
            ++RWL+ELRDH DSNIVIM+ GNK+DL+HLRAVS ED Q+ AEKE   F+ETSALE++N+E AF  +LT+IY ++S+KAL   +  + LP +G TIN+    D SA ++  CCS
Sbjct:  103 VQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVA---DASANQRRSCCS 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.598e-29
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIG-TKDDVSAVKKTGCC 339
            + RWLKELR+H DSNIVIMLVGNK DL HLRAVSTE+AQ+FA + N  F+ETSA+++ NVE AF  VLT+I+R+VS ++L+ GDD      GQT+NI  T +D++  K +  C
Sbjct:  101 VGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSSQC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.771e-28
Identity = 66/116 (56.90%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA--ALP-KGQTINIGTKDDVSAVKKTGCCS 342
            ++RWL+ELRDH DSNIVI+L GNK+DL+HLRAVS +D Q+  +KE   F+ETSALE+LNV+ AF  +LT IY ++S+KAL   +  A  ALP +G TIN+    D SA  K GCCS
Sbjct:  103 VQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINV---SDNSANVKRGCCS 215          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   10 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALP-KGQTINIGTKDDVSAVKKTGCCSA 345
            RWL+ELRDH DSNIVIM+ GNK+DL HLR+V+ ED QS AEKE   F+ETSALE+ NVE AF  +L +IY ++S+KAL   +  A   A+P +G TIN+   DD S   K  CCS+
Sbjct:  105 RWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINV---DDTSGGAKRACCSS 217          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.552e-27
Identity = 62/114 (54.39%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVK--KTGCC 339
            +ERWLKELRDH D+NIVIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +         P    ++I         K  K  CC
Sbjct:  102 VERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGNNVVDISVPPTTDGQKSNKLQCC 215          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP---KGQTINIGTKDDVSAVKKTGCCS 342
            ++RWL+ELRDH DSNIVIM+ GNK+DL HLRAVS +D  + +EKE   F+ETSALE+ N+E AF  +LT+IY +VS+KAL   +  A      +G TIN+    D S   K GCCS
Sbjct:  103 VQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVA---DTSGNTKKGCCS 215          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVK--KTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +         P    ++I         K  K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVK--KTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +         P    ++I         K  K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVK--KTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +         P    ++I         K  K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
The following BLAST results are available for this feature:
BLAST of CK934077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RB2BV_BETVU7.175e-3056.14Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
YPT3_SCHPO1.598e-2957.52GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11A_TOBAC8.771e-2856.90Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH1.954e-2756.03Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11B_DISOM2.552e-2754.39Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11C_LOTJA3.333e-2753.45Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11B_RAT3.333e-2755.26Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_HUMAN3.333e-2755.26Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN3.333e-2755.26Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_RAT3.333e-2754.46Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934077 ID=CK934077; Name=CK934077; organism=Citrus sinensis; type=EST; length=761bp
GGGATTGAGAGATGGTTGAAAGAGCTTCGGGATCACACTGACTCAAACAT
TGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCACTTGCGTGCTG
TTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAAAGAGAACACTTTCTTC
ATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAATGCCTTCACCGA
AGTGCTCACTCAGATATATCGAGTTGTTAGCAGGAAGGCTCTTGATGTAG
GTGATGACCCAGCAGCCTTGCCCAAGGGTCAAACTATTAATATTGGTACT
AAAGATGATGTATCGGCTGTGAAAAAGACTGGGTGCTGCTCTGCATAATC
TGCAGCTTCGAAGGAAAATCCAGGTGCTAAAAAATAGTTTCTCCTCTTTC
TAGAACTTACATTTCCATGGCTTGGAGACATCTTGGCTTTGATCTGCTTG
CCAGGACGAGACAACATGGAGTGCGGGAAGAAATTATAGTTTTACATTTC
ATCATGTACCGGTAATCTCAAAATCTTGCTTGAGTTAGGTTAAAGCCATA
ATCATTTGGATCTGAGATCTCATGTTTGTGCAAGAGCCTACTGTTTTTCT
CTTATTGTATTGTCTCTGTTTGTCTCCAAAAAATATTGTAGTATGTTATC
AGCTCCTAAGCTCTAGGATAGTTTATATTTGGTTTCTGAGGACTGGAATT
TGGGAAGTATGTTAAGATAATTCTGTTCGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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