CK934077

Overview
NameCK934077
Unique NameCK934077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 4.353e-27
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL--DVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 345
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +      D +       I++    D     K  CC +
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQRPNKLQCCQS 217          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.353e-27
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  102 VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKMQCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAA---LP-KGQTINIGTKDDVSAVKKTGCCSA 345
            + RWL+ELRDH DS+IVIM+VGNK+DL HLRAVS ++ ++ AEKE  FF+ETSA+E++NVE AF  ++T++Y +V+RKAL   +  AA   LP +G+TI+I   D  +   K  CCSA
Sbjct:  103 VHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISI---DSAAGNTKRACCSA 217          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.267e-26
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-----PAALPKGQTINIGTKDDVSAVKKTGCCS 342
            + RWL+ELR H D NIVIML+GNK+DL  LR V TEDA+ FAE+EN FFMETSALES NVENAF  VLT+IYR+VS+K L   ++      ++L KG  I +  ++     K + C S
Sbjct:  109 VARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226          
The following BLAST results are available for this feature:
BLAST of CK934077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RB11A_RABIT3.333e-2754.46Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB3.333e-2754.46Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG3.333e-2754.46Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE3.333e-2754.46Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN3.333e-2754.46Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CANFA3.333e-2754.46Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11B_MOUSE4.353e-2754.31Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11A_CHICK4.353e-2754.46Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RGP2_ORYSJ5.685e-2753.39Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RGP1_ORYSJ1.267e-2654.24Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934077 ID=CK934077; Name=CK934077; organism=Citrus sinensis; type=EST; length=761bp
GGGATTGAGAGATGGTTGAAAGAGCTTCGGGATCACACTGACTCAAACAT
TGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCACTTGCGTGCTG
TTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAAAGAGAACACTTTCTTC
ATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAATGCCTTCACCGA
AGTGCTCACTCAGATATATCGAGTTGTTAGCAGGAAGGCTCTTGATGTAG
GTGATGACCCAGCAGCCTTGCCCAAGGGTCAAACTATTAATATTGGTACT
AAAGATGATGTATCGGCTGTGAAAAAGACTGGGTGCTGCTCTGCATAATC
TGCAGCTTCGAAGGAAAATCCAGGTGCTAAAAAATAGTTTCTCCTCTTTC
TAGAACTTACATTTCCATGGCTTGGAGACATCTTGGCTTTGATCTGCTTG
CCAGGACGAGACAACATGGAGTGCGGGAAGAAATTATAGTTTTACATTTC
ATCATGTACCGGTAATCTCAAAATCTTGCTTGAGTTAGGTTAAAGCCATA
ATCATTTGGATCTGAGATCTCATGTTTGTGCAAGAGCCTACTGTTTTTCT
CTTATTGTATTGTCTCTGTTTGTCTCCAAAAAATATTGTAGTATGTTATC
AGCTCCTAAGCTCTAGGATAGTTTATATTTGGTTTCTGAGGACTGGAATT
TGGGAAGTATGTTAAGATAATTCTGTTCGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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