CK934077

Overview
NameCK934077
Unique NameCK934077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA------ALPKGQTINI--GTKDDVSAVKKTGCC 339
            WL ELR++ D N+ + L+GNK+DL HLRAV T++A++FA +    F ETSAL S NV+ AF E++  I+++VS+  +D+             PKG TI++    K+D    K + CC
Sbjct:  107 WLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKED-KKKKSSNCC 222          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRK 237
            +ERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct:  103 VERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            +ERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++  +     +A+  G   N     D    +K  CC
Sbjct:  103 VERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQN-STRTSAITLG---NAQAGQDPGPGEKRACC 210          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.457e-16
Identity = 51/126 (40.48%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD--------------PAALPKGQTINIGTKDDVSAVKKTGCC 339
            + RWL ELR+  + +I+IM+VGNK+DL   R V T++AQ+FAE     F+ETSAL S NV  +F  +LT IY +VS K   V DD              P + P  Q             KK+GCC
Sbjct:  101 VTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQL--TANTTSTHQEKKSGCC 224          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.314e-15
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 342
            WL++ R H ++N+ IMLVGNK DL H RAVS E+ + FA++    FME SA  + NVE AF +    IY+ +     DV ++   +  G  +   +    S+ +  GCCS
Sbjct:  100 WLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYVVPGQSGGAGSSSQGGGCCS 209          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.716e-15
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG--------QTINIGTKDDVSAVKKTGCC 339
            WL++ R H + N+ IML+GNK DL H RAV+TE+ + FA++    F+ETSA  + NVE AF     +IY+ +     DV ++   +  G        QT+  G   +  A K + CC
Sbjct:  100 WLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPG---EGGAAKSSSCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.716e-15
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKK--------TGCC 339
            WL++ R H+ SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IYR + +   DV ++   +  G   +I T    SA ++        +GCC
Sbjct:  100 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-------PAALPKGQTINIG 297
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY+ +     D+ ++       P   P  Q++N+G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVG 201          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTI-NIGTK----DDVSAVKKTGCC 339
            WL++ R H + N+ IML+GNK DL H RAV+TE+ + FA++    F+ETSA  + NVE AF     +IY+ +     DV ++   +  G    N G +     +  A K + CC
Sbjct:  100 WLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTI-NIGTKDDVSAVKKTGCCS 342
            WL++ R H ++N+ IMLVGNK DL H RAVS E+ + FA++    FME SA  + NVE AF +    IY+ +     DV ++   +  G  I         S+ +  GCCS
Sbjct:  100 WLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYAIPGQSGGAGSSSSQGGGCCS 210          
The following BLAST results are available for this feature:
BLAST of CK934077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
YPT32_YEAST1.075e-1741.03GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB25_HUMAN1.075e-1756.41Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_MOUSE1.833e-1745.54Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RB11C_DICDI3.457e-1640.48Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB2A_MAIZE1.314e-1538.18Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
YPTC4_CHLRE1.716e-1536.75GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2B_HUMAN1.716e-1537.61Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2_LYMST8.515e-1538.24Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
YPTV4_VOLCA1.112e-1436.84GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB2B_MAIZE1.112e-1438.74Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934077 ID=CK934077; Name=CK934077; organism=Citrus sinensis; type=EST; length=761bp
GGGATTGAGAGATGGTTGAAAGAGCTTCGGGATCACACTGACTCAAACAT
TGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCACTTGCGTGCTG
TTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAAAGAGAACACTTTCTTC
ATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAATGCCTTCACCGA
AGTGCTCACTCAGATATATCGAGTTGTTAGCAGGAAGGCTCTTGATGTAG
GTGATGACCCAGCAGCCTTGCCCAAGGGTCAAACTATTAATATTGGTACT
AAAGATGATGTATCGGCTGTGAAAAAGACTGGGTGCTGCTCTGCATAATC
TGCAGCTTCGAAGGAAAATCCAGGTGCTAAAAAATAGTTTCTCCTCTTTC
TAGAACTTACATTTCCATGGCTTGGAGACATCTTGGCTTTGATCTGCTTG
CCAGGACGAGACAACATGGAGTGCGGGAAGAAATTATAGTTTTACATTTC
ATCATGTACCGGTAATCTCAAAATCTTGCTTGAGTTAGGTTAAAGCCATA
ATCATTTGGATCTGAGATCTCATGTTTGTGCAAGAGCCTACTGTTTTTCT
CTTATTGTATTGTCTCTGTTTGTCTCCAAAAAATATTGTAGTATGTTATC
AGCTCCTAAGCTCTAGGATAGTTTATATTTGGTTTCTGAGGACTGGAATT
TGGGAAGTATGTTAAGATAATTCTGTTCGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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