CK934077

Overview
NameCK934077
Unique NameCK934077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3006 contig Csv1_Contig3006:502..1262. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.519e-14
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQ----TINIG---TKDDVSAV-KKTGCC 339
            WL++ R H+ SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE A+     +IYR + +   DV ++   +  G     T ++G    + +VS +   +GCC
Sbjct:  100 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 279
            WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:  100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   13 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKT--GCC 339
            WLK+ R + +SN+ I+L+GNK+D+   RAVS E+ + FA++    F+ETSA  + NVE AF    ++IY  + +   D+ ++   +  G      +K D +  K    GCC
Sbjct:   99 WLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKLGAPT---SKQDGTDQKPAGGGCC 206          
The following BLAST results are available for this feature:
BLAST of CK934077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RAB2B_MOUSE5.519e-1436.75Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_RAT1.606e-1339.33Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT1.606e-1339.33Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB1.606e-1339.33Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE1.606e-1339.33Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA1.606e-1339.33Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN1.606e-1339.33Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK1.606e-1339.33Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA1.606e-1339.33Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_DICDI2.097e-1335.14Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934077 ID=CK934077; Name=CK934077; organism=Citrus sinensis; type=EST; length=761bp
GGGATTGAGAGATGGTTGAAAGAGCTTCGGGATCACACTGACTCAAACAT
TGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCACTTGCGTGCTG
TTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAAAGAGAACACTTTCTTC
ATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAATGCCTTCACCGA
AGTGCTCACTCAGATATATCGAGTTGTTAGCAGGAAGGCTCTTGATGTAG
GTGATGACCCAGCAGCCTTGCCCAAGGGTCAAACTATTAATATTGGTACT
AAAGATGATGTATCGGCTGTGAAAAAGACTGGGTGCTGCTCTGCATAATC
TGCAGCTTCGAAGGAAAATCCAGGTGCTAAAAAATAGTTTCTCCTCTTTC
TAGAACTTACATTTCCATGGCTTGGAGACATCTTGGCTTTGATCTGCTTG
CCAGGACGAGACAACATGGAGTGCGGGAAGAAATTATAGTTTTACATTTC
ATCATGTACCGGTAATCTCAAAATCTTGCTTGAGTTAGGTTAAAGCCATA
ATCATTTGGATCTGAGATCTCATGTTTGTGCAAGAGCCTACTGTTTTTCT
CTTATTGTATTGTCTCTGTTTGTCTCCAAAAAATATTGTAGTATGTTATC
AGCTCCTAAGCTCTAGGATAGTTTATATTTGGTTTCTGAGGACTGGAATT
TGGGAAGTATGTTAAGATAATTCTGTTCGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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