CK934077

Overview
NameCK934077
Unique NameCK934077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3006 contig Csv1_Contig3006:502..1262. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIY 219
            +E+WLK+ R++   +  IMLVGNK+DL+  R VST + + FAEK    F+ETSAL+S NVE AF  +   IY
Sbjct:  102 LEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIY 173          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 249
            +  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:  102 LSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 249
            +  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:  102 LSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 249
            +  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:  102 LSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 249
            +  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:  102 LSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 249
            +  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:  102 LSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    4 IERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 249
            +  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:  102 LSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 40/111 (36.04%), Postives = 54/111 (48.65%), Query Frame = 1
Query:   10 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 342
            +W+KEL+     NIVI L GNK DL   R V T +AQ +AE+    FMETSA  S NV   F E+  ++ +            P   P    + I   D+ +  KK  CC+
Sbjct:  102 KWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKT-----------PTTRPGSGRVAIAPIDNGNTGKKNKCCN 201          
BLAST of CK934077 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    1 GIERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 339
            G++ WL+E+  +  S ++ +LVGNK DL+  R V  + A+ FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L    +     K    N+  K         GCC
Sbjct:   98 GVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL----NETTQKKEDKGNVNLKGQSLTNTGGGCC 206          
The following BLAST results are available for this feature:
BLAST of CK934077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RB11B_DICDI2.319e-1250.00Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB14_RAT1.963e-1142.68Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.963e-1142.68Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.963e-1142.68Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE1.963e-1142.68Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.963e-1142.68Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.963e-1142.68Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB5A_DICDI3.349e-1136.04Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
YPT1_YEAST9.743e-1134.51GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934077 ID=CK934077; Name=CK934077; organism=Citrus sinensis; type=EST; length=761bp
GGGATTGAGAGATGGTTGAAAGAGCTTCGGGATCACACTGACTCAAACAT
TGTGATAATGCTTGTGGGTAACAAGGCTGATTTGCGTCACTTGCGTGCTG
TTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAAAGAGAACACTTTCTTC
ATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTGAAAATGCCTTCACCGA
AGTGCTCACTCAGATATATCGAGTTGTTAGCAGGAAGGCTCTTGATGTAG
GTGATGACCCAGCAGCCTTGCCCAAGGGTCAAACTATTAATATTGGTACT
AAAGATGATGTATCGGCTGTGAAAAAGACTGGGTGCTGCTCTGCATAATC
TGCAGCTTCGAAGGAAAATCCAGGTGCTAAAAAATAGTTTCTCCTCTTTC
TAGAACTTACATTTCCATGGCTTGGAGACATCTTGGCTTTGATCTGCTTG
CCAGGACGAGACAACATGGAGTGCGGGAAGAAATTATAGTTTTACATTTC
ATCATGTACCGGTAATCTCAAAATCTTGCTTGAGTTAGGTTAAAGCCATA
ATCATTTGGATCTGAGATCTCATGTTTGTGCAAGAGCCTACTGTTTTTCT
CTTATTGTATTGTCTCTGTTTGTCTCCAAAAAATATTGTAGTATGTTATC
AGCTCCTAAGCTCTAGGATAGTTTATATTTGGTTTCTGAGGACTGGAATT
TGGGAAGTATGTTAAGATAATTCTGTTCGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
back to top