CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOL5 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE ++ AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVNAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOK1 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=ydcW PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE ++ AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVNAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECO81 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=ydcW PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE ++ AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVNAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECO45 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE ++ AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVNAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_PECCP (Gamma-aminobutyraldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=PC1_1415 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            G+   V++P T E IA +A+ D   +D AV  A  AF    W + TP  R+ ++L+ AD IE+N E  A LE+ N GKPY  +L  EVP V  +  ++AG A  + G
Sbjct:   16 GEALAVFNPATGEQIAAIAQADLHQVDAAVLAAESAFAH--WGQTTPKTRATLLLQIADAIEENAEAFARLESLNCGKPYHAALNDEVPAVADVFRFFAGAARCLSG 120          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ACIAD (Betaine aldehyde dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.369e-14
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GKTF   +P T EVIA + +    DI+ AV +A +   +  W   T  ERSRI+ RA D++ +  +ELA LET + GK + ++   ++     +L YYAG A  I G  VP
Sbjct:   21 GKTFDSINPATGEVIATIQQASQTDIEAAVKSAAEG--QKVWAAKTAVERSRILRRAVDILRERNDELAQLETLDTGKAFSETSTVDIVTGADVLEYYAGLATAIQGEQVP 129          

HSP 2 Score: 21.557 bits (44), Expect = 1.369e-14
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  285 INGQFVDAASGK 320
            I+GQ+ DA SGK
Sbjct:   11 IHGQYTDATSGK 22          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_STRM5 (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-14
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GKTF   +P T +VIA V      D++RAV +A +   +  W  MT  ERSRI+ RA +++ +  +ELA LET + GK   ++   ++     ++ YYAG A  I G+ +P
Sbjct:   21 GKTFRTVNPATGDVIAEVQVASQADVERAVQSAAEG--QKVWAAMTAMERSRILRRAVEILRERNDELAHLETLDTGKALAETTTVDIVTGADVVEYYAGLATAIEGIQLP 129          

HSP 2 Score: 21.9422 bits (45), Expect = 1.369e-14
Identity = 13/22 (59.09%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  255 PVQISYTKNLINGQFVDAASGK 320
            PVQ  Y    I+GQ VDA SGK
Sbjct:    5 PVQQLY----IHGQRVDATSGK 22          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEA7 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            G TF   +P   EV+A V     ED++RAV +A +   +  W  MT  +RSRI+ RA DL+ +  +ELAALET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:   21 GATFETINPANGEVLAKVQRASREDVERAVQSAVEG--QKVWAAMTAMQRSRILRRAVDLLRERNDELAALETLDTGKPLAETRAVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH6_YEAST (Magnesium-activated aldehyde dehydrogenase, cytosolic OS=Saccharomyces cerevisiae GN=ALD6 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTV-PGDGXXHIQTL 763
            GKT+PV DP T   +  V+    ED++ A+  A +AF +  W    P ER R++ + AD +E  ++ ++++E  +NGK    + + +V + +  L   A +ADK++G T+  GDG  +  TL
Sbjct:   40 GKTYPVEDPSTENTVCEVSSATTEDVEYAIECADRAFHDTEWATQDPRERGRLLSKLADELESQIDLVSSIEALDNGKTLALA-RGDVTIAINCLRDAAAYADKVNGRTINTGDGYMNFTTL 160          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH5_YEAST (Aldehyde dehydrogenase 5, mitochondrial OS=Saccharomyces cerevisiae GN=ALD5 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            KTF V +P   E I  V +   +D+D AVA A+KAF E  W  + P  R++ +   ADL+EK+ E LAA+E+ +NGK  +   + +V +V + L    GWADKI+G
Sbjct:   59 KTFDVINPSNEEKITTVYKAMEDDVDEAVAAAKKAF-ETKWSIVEPEVRAKALFNLADLVEKHQETLAAIESMDNGKS-LFCARGDVALVSKYLRSCGGWADKIYG 162          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
ABDH_ECOL56.661e-1538.89Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOK16.661e-1538.89Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO816.661e-1538.89Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO456.661e-1538.89Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_PECCP8.699e-1540.19Gamma-aminobutyraldehyde dehydrogenase OS=Pectobac... [more]
BETB_ACIAD1.369e-1438.74Betaine aldehyde dehydrogenase OS=Acinetobacter sp... [more]
BETB_STRM51.369e-1436.94Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_PSEA71.484e-1438.74Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
ALDH6_YEAST1.484e-1432.79Magnesium-activated aldehyde dehydrogenase, cytoso... [more]
ALDH5_YEAST1.484e-1441.51Aldehyde dehydrogenase 5, mitochondrial OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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