CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECO55 (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-14
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G+TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECO45 (Betaine aldehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-14
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G+TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH2_YEAST (Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyces cerevisiae GN=ALD2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-14
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKI-HGLTVP 733
            GKT    +P T E I +    + +D+D+AV  AR AFD   W K +  +R   +     LIE+  + LAALET + GKPY  + K ++  +++L  Y+AG ADK   G T+P
Sbjct:   35 GKTIETVNPATGEPITSFQAANEKDVDKAVKAARAAFDN-VWSKTSSEQRGIYLSNLLKLIEEEQDTLAALETLDAGKPYHSNAKGDLAQILQLTRYFAGSADKFDKGATIP 145          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECOLU (Betaine aldehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.639e-14
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G+TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +   ELA LET + GK Y ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNNELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ERWCT (Gamma-aminobutyraldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=ECA1542 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.639e-14
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            G+   V++P T E IA + + D   ID AV  A  AF    W + TP  R+ ++L+ AD IE+N E  A LE+ N GKPY   L  EVP V  +  ++AG A  + G
Sbjct:   16 GEALAVFNPATGEQIAAIPQADLHQIDAAVLAAESAFAH--WGQTTPKTRATLLLKIADAIEENAEVFAKLESLNCGKPYHAVLNDEVPAVADVFRFFAGAARCLSG 120          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECOL5 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.364e-14
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGHTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH3_YEAST (Aldehyde dehydrogenase [NAD(P)+] 2 OS=Saccharomyces cerevisiae GN=ALD3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.618e-14
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIH-GLTVP 733
            GKT    +P T E I +    + +D+D+AV  AR AFD   W K +  +R   +     LIE+  + LAALET + GKP+  + K ++  ++ L  YYAG  DK + G T+P
Sbjct:   35 GKTIETVNPATGEPITSFQAANEKDVDKAVKAARAAFDN-VWSKTSSEQRGIYLSNLLKLIEEEQDTLAALETLDAGKPFHSNAKQDLAQIIELTRYYAGAVDKFNMGETIP 145          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEF5 (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P   EV+A V     ED++RAV +A K   +  W  MT  ERSRI+ RA +++ +  +ELAALET + GK + ++   ++     +L YYAG    I G  +P
Sbjct:   23 TFDAINPANGEVLAQVQRATKEDVERAVVSAEKG--QKIWAAMTAMERSRILRRAVEILRERNDELAALETLDTGKAFSETKYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SALTY (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhimurium GN=ydcW PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+   VY+P T EVI  +AE     +D AV  A  AF E  W + TP  R+  +L+ AD IE+N  E A LE+ N GKP    +  E+P +V +  ++AG A  + GL
Sbjct:   16 GERQSVYNPATGEVILEIAEASPAQVDAAVQAADNAFAE--WGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHCVINDEIPAIVDVFRFFAGAARCLSGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SALPC (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=ydcW PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+   VY+P T EVI  +AE     +D AV  A  AF E  W + TP  R+  +L+ AD IE+N  E A LE+ N GKP    +  E+P +V +  ++AG A  + GL
Sbjct:   16 GERQSVYNPATGEVILEIAEASPAQVDAAVLAADSAFAE--WGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHCVINDEIPAIVDVFRFFAGAARCLSGL 121          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
BETB_ECO554.317e-1436.21Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO454.317e-1436.21Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
ALDH2_YEAST4.317e-1438.39Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyce... [more]
BETB_ECOLU5.639e-1436.21Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
ABDH_ERWCT5.639e-1440.19Gamma-aminobutyraldehyde dehydrogenase OS=Erwinia ... [more]
BETB_ECOL57.364e-1436.21Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
ALDH3_YEAST9.618e-1437.50Aldehyde dehydrogenase [NAD(P)+] 2 OS=Saccharomyce... [more]
BETB_PSEF51.641e-1337.61Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
ABDH_SALTY1.641e-1339.81Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
ABDH_SALPC1.641e-1339.81Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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