CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SALPB (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydcW PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+   VY+P T EVI  +AE     +D AV  A  AF E  W + TP  R+  +L+ AD IE+N  E A LE+ N GKP    +  E+P +V +  ++AG A  + GL
Sbjct:   16 GERQSVYNPATGEVILEIAEASPAQVDAAVLAADSAFAE--WGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHCVINDEIPAIVDVFRFFAGAARCLSGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SALCH (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella choleraesuis GN=ydcW PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+   VY+P T EVI  +AE     +D AV  A  AF E  W + TP  R+  +L+ AD IE+N  E A LE+ N GKP    +  E+P +V +  ++AG A  + GL
Sbjct:   16 GERQSVYNPATGEVILEIAEASPAQVDAAVLAADSAFAE--WGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHCVINDEIPAIVDVFRFFAGAARCLSGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSE14 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.143e-13
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            +TF   +P   EV+A +     ED++RAV  A K   +  W  MT  ERSRI+ RA D++ +  +ELAALET + GK   ++   ++     +L YYAG    I G  +P
Sbjct:   22 ETFDAINPANGEVLAQIQRAGKEDVERAVVAAEKG--QKIWAAMTAVERSRILRRAVDILRERNDELAALETLDTGKAISETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SALTI (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhi GN=ydcW PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.143e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+   VY+P T EVI  +AE     +D AV  A  AF E  W + TP  R+  +L+ AD IE+N  E A LE+ N GKP    +  E+P +V +  ++AG A  + GL
Sbjct:   16 GERQSVYNPATGEVILEIAEASPVQVDAAVLAADSAFAE--WGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHCVINDEIPAIVDVFRFFAGAARCLSGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: HPCC_ECOLX (5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase OS=Escherichia coli GN=hpcC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  410 FPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGD 739
            F   +P T EV+A+VA G   +I++AVATA++AF +  W  +   ER+R+M R  DLI++N+ E+AA+ET + G P  Q+    +P       ++A    +++G T P D
Sbjct:   19 FLTTNPATGEVLADVASGGEAEINQAVATAKEAFPK--WANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIPRASHNFEFFAEVCQQMNGKTYPVD 126          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSESM (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. tomato GN=betB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            +TF   +P   EV+A +     ED++RAV  A K   +  W  MT  ERSRI+ RA D++ +  +ELAALET + GK   ++   ++     +L YYAG    I G  +P
Sbjct:   22 ETFDSINPANGEVLAKIQRASKEDVERAVVAAEKG--QKIWAAMTAVERSRILRRAVDILRERNDELAALETLDTGKAISETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_VIBHB (Betaine aldehyde dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.655e-13
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  410 FPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            F  Y+P   E +ANV + + +D+  A+ +A++ F    W  MT  ERSRI+L+A  L+ +  +ELAALE  + GKP  ++   ++     ++ YYAG A  +HG   P
Sbjct:   21 FTTYNPANGEPLANVKQANQQDMQAAIESAKRGF--AIWSAMTATERSRILLKAVALLRERNDELAALEVADTGKPIQEANCVDIATGADVIEYYAGLAPSMHGEQQP 126          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEU2 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            +TF   +P   EV+A +     +D++RAV  A K   +  W  MT  ERSRI+ RA D++ +  +ELAALET + GK   ++   ++     +L YYAG    I G  +P
Sbjct:   22 ETFDAINPANGEVLAQIQRAGKDDVERAVVAAEKG--QKIWAAMTAVERSRILRRAVDILRERNDELAALETLDTGKAISETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SALPA (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi A GN=ydcW PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+   VY+P T EVI  +AE     ID AV  A   F E  W + TP  R+  +L+ AD IE+N  E A LE+ N GKP    +  E+P +V +  ++AG A  + GL
Sbjct:   16 GERQSVYNPATGEVILEIAEASPAQIDAAVQAAVNTFAE--WGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHCVINDEIPAIVDVFRFFAGAARCLSGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.234e-13
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  395 ALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            A G   PV  P   E IA + E     I+ A+A+  +A  +  W  + P ER+RI+ RA+DLI    EEL+ LET + GKP  ++L ++ P     L ++AG A  + G TVP  G   + T+ E
Sbjct:   19 AAGAPIPVIHPANGEEIARLHEATPAVIEAALASGARA--QKDWAALRPVERARILRRASDLIRARNEELSILETLDTGKPLQETLVADWPSGADALEFFAGLAPAVTGETVP-LGQDFVYTIRE 140          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
ABDH_SALPB1.641e-1339.81Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
ABDH_SALCH1.641e-1339.81Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
BETB_PSE142.143e-1337.27Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
ABDH_SALTI2.143e-1339.81Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
HPCC_ECOLX2.798e-1337.275-carboxymethyl-2-hydroxymuconate semialdehyde deh... [more]
BETB_PSESM2.798e-1337.27Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
BETB_VIBHB3.655e-1336.11Betaine aldehyde dehydrogenase OS=Vibrio harveyi (... [more]
BETB_PSEU24.773e-1336.36Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
ABDH_SALPA4.773e-1339.81Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
BETB_RHOS56.234e-1336.80Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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