CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEPK (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P T EV+A+V      D+++AV +A +   +  W  MT  +RSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    I G  +P
Sbjct:   23 TFEAINPATGEVLAHVQRATEADVEKAVESAERG--QKVWAAMTAMQRSRILRRAVDILRERNDELAMLETLDTGKSYSETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEPG (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P T EV+A+V      D+++AV +A +   +  W  MT  +RSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    I G  +P
Sbjct:   23 TFEAINPATGEVLAHVQRATEADVEKAVESAERG--QKVWAAMTAMQRSRILRRAVDILRERNDELAQLETLDTGKSYSETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEP1 (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P T EV+A+V      D+++AV +A +   +  W  MT  +RSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    I G  +P
Sbjct:   23 TFEAINPATGEVLAHVQRATEADVEKAVESAERG--QKVWAAMTAMQRSRILRRAVDILRERNDELAMLETLDTGKSYSETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEE4 (Betaine aldehyde dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P T EV+A+V      D+++AV +A +   +  W  MT  +RSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    I G  +P
Sbjct:   23 TFEAINPATGEVLAHVQRATQADVEKAVESAERG--QKVWAAMTAMQRSRILRRAVDILRERNDELAMLETLDTGKSYSETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDHY_YEAST (Aldehyde dehydrogenase 2, mitochondrial OS=Saccharomyces cerevisiae GN=ALD2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.142e-13
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  392 LALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVAT--ARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG-----LTVP 733
            L L K FPVY+P T E I  V+E    D      T  + K+  +     +   ER R++   ADLIE++ + LAA+E  +NGKP+ ++   ++  V++ L Y AGWADK+HG     +T+P
Sbjct:   52 LVLEKIFPVYNPSTEEDITQVSEKSQHDSTEEDITQVSEKSQHDDDKAVVDISERGRLLNILADLIERDRDILAAIEHLDNGKPFDEAYLLDLASVLKELRYTAGWADKLHGTLRFAITIP 172          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEPW (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain W619) GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P T EV+A+V      D+++AV +A +   +  W  MT  +RSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    I G  +P
Sbjct:   23 TFEAINPATGEVLAHVQRATQADVEKAVESAERG--QKIWAAMTAMQRSRILRRAVDILRERNDELAMLETLDTGKSYSETRYVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P   E+IA +      D+DRAV  A  A  +  W  MT  ERSRI+ RA D++ +  +ELA LET + GKP  ++   ++     +L YYAG    + G  +P
Sbjct:   23 TFDAVNPANGEIIAQLQSATVADVDRAVIAA--AAGQKIWAAMTAMERSRILRRAVDILRERNDELALLETHDTGKPLSETRTVDIVTGADVLEYYAGLIPMLEGQQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ERWCT (Betaine aldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=betB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            TF   +P   ++IA +    A D+DRAV+ A     +  W  MT  ERSRI+ RA D++ +  +ELA LET + GKP  ++   ++     +L YYAG    + G  +P
Sbjct:   23 TFDAVNPANGDIIACIQSATAADVDRAVSAATAG--QKVWAAMTAMERSRILRRAVDILRERNDELALLETHDTGKPLSETRTVDIVTGADVLEYYAGLIPMLEGQQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_RHOSK (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=betB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G   PV  P T E IA + E     I+ A+A+  +A  +  W  M P ER+RI+ RA+DLI    EEL+ LET + GKP  ++L ++       L ++AG A  + G TVP  G   + T+ E
Sbjct:   21 GAPIPVIYPATGEEIARLHEATPAVIEAALASGARA--QAAWAAMRPVERARILRRASDLIRARNEELSLLETLDTGKPLQETLVADWASGADALEFFAGLAPAVTGETVP-LGQDFVYTIRE 140          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G   PV  P T E IA + E     I+ A+A+  +A  +  W  M P ER+RI+ RA+DLI  + EEL+ LET + GKP  ++L ++       L ++AG A  + G TVP  G   + T+ E
Sbjct:   21 GAPIPVIYPATGEEIARLHEATPAVIEAALASGARA--QAAWAAMRPVERARILRRASDLIRAHNEELSLLETLDTGKPLQETLVADWASGADALEFFAGLAPVVTGETVP-LGQDFVYTIRE 140          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
BETB_PSEPK8.142e-1335.78Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEPG8.142e-1335.78Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEP18.142e-1335.78Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEE48.142e-1335.78Betaine aldehyde dehydrogenase OS=Pseudomonas ento... [more]
ALDHY_YEAST8.142e-1337.19Aldehyde dehydrogenase 2, mitochondrial OS=Sacchar... [more]
BETB_PSEPW1.063e-1235.78Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PECCP1.063e-1236.70Betaine aldehyde dehydrogenase OS=Pectobacterium c... [more]
BETB_ERWCT1.063e-1235.78Betaine aldehyde dehydrogenase OS=Erwinia carotovo... [more]
BETB_RHOSK1.389e-1237.40Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHOS41.389e-1237.40Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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