CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G   PV  P T E IA + E     I+ A+A+  +A  +  W  M P ER+RI+ RA+DLI    EEL+ LET + GKP  ++L ++       L ++AG A  + G TVP  G   + T+ E
Sbjct:   21 GAPIPVIYPATGEEIARLHEATPAVIEAALASGARA--QAAWAAMRPVERARILRRASDLIRARNEELSLLETLDTGKPLQETLVADWASGADALEFFAGLAPAVTGETVP-LGQDFVYTIRE 140          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SALAR (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ydcW PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+   VY+P T EVI  +AE   + +D AV  A  AF    W + TP  R+  +L  AD I++N  +LA LE+ N GKP    +  E+P ++ +  ++AG A  ++GL
Sbjct:   16 GERQSVYNPATGEVILEIAEASPKQVDAAVLAADNAFTA--WGQTTPKVRAECLLELADSIKQNALQLAKLESQNCGKPLHCVINDEIPAIIDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_VIBPA (Betaine aldehyde dehydrogenase OS=Vibrio parahaemolyticus GN=betB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 35/108 (32.41%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  410 FPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            F  Y+P   E +AN+ + +  D++ A+ +A++ F+   W  MT  ERSRI+ +A  ++ +  +ELAALE  + GKP  +++  ++     ++ YYAG A  + G   P
Sbjct:   21 FTTYNPANGEPLANIKQANQSDMEAAIESAKRGFEV--WSAMTAIERSRILNKAVAILRERNDELAALEVADTGKPIQEAIAVDITTGADVIEYYAGLAPSLQGEQQP 126          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_AGABI (Aldehyde dehydrogenase OS=Agaricus bisporus GN=aldA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 37/121 (30.58%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            T  V +P   ++I  ++E    DID AV  A KAF+       +  +R  ++ + A L+EKN+++L+A+E  +NGK ++ +   ++ + +  + +YAGWADK  G  +  D      + HE
Sbjct:   38 TIDVVNPANGKLITKISEATEADIDIAVEAAHKAFETTWGLNCSGSKRGDMLYKLAQLMEKNIDDLSAIEALDNGKTFLWAKSVDLSLSISTIKHYAGWADKNFGQVIETDEKKLTYSRHE 158          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BADH_GADCA (Betaine aldehyde dehydrogenase OS=Gadus callarias GN=aldh9A1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  407 TFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG--LTVPG 736
            T PV++P T  V+  +    AE++D+AV +A+ A+ +  W KM   ERSR+ML AA +I +  + +A LE  NNGK   ++ + ++    + + YYAG A  + G  + +PG
Sbjct:   37 TEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLK--WSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEA-EYDIDAAWQCIEYYAGLAPTLSGQHIQLPG 145          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_DEIRA (Aldehyde dehydrogenase OS=Deinococcus radiodurans GN=aldA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAG 700
            G+ F    P   +V    A   AED++ A+  A +A     W + +  ERS I+L+ AD +E+N+E LA  ETW+NGKP  ++L +++P+ +    Y+AG
Sbjct:   43 GQYFDNASPVDGKVFTQAARSTAEDVELALDAAHRAAPA--WGRTSVTERSNILLKIADRMEQNLEMLAVAETWDNGKPVRETLAADLPLAIDHFRYFAG 140          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: IOLA_BACHD (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus halodurans GN=iolA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.599e-12
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GKT  V +P T E++A+V   + ED+DRAV+ A++AF    W K     R+R++ +   L+ +N EELA L T  NGK Y ++   EV   +  + + AG    + G  +P
Sbjct:   24 GKTEAVPNPATGEILAHVPISNREDLDRAVSVAKEAFK--TWGKTPVPRRARVLFKYQQLLVENWEELARLVTLENGKSYKEAY-GEVQRGIECVEFAAGAPSLMMGKQLP 131          

HSP 2 Score: 22.7126 bits (47), Expect = 5.599e-12
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  276 KNLINGQFVDAASGK 320
            KN I GQ+V++ SGK
Sbjct:   11 KNFIGGQWVESDSGK 25          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_STRCO (Probable aldehyde dehydrogenase OS=Streptomyces coelicolor GN=SCO1174 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.002e-12
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  395 ALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAG 700
            A G+ F    P        +A G A+D++RA+  A +A     W + +  ERS I+L+ AD +E N+E LA  E+W NGKP  ++L +++P+ +    Y+AG
Sbjct:   32 ARGQYFENPSPVNGLPFTEIARGTADDVERALDAAHEAAPG--WGRTSVTERSDILLKIADRMEANLERLAVAESWENGKPVRETLAADIPLAIDHFRYFAG 131          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_VIBCH (Aldehyde dehydrogenase OS=Vibrio cholerae GN=aldA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYA 697
            G+ F    P    V   VA   ++D++ A+  A  A +   W   +  ERS I+LR AD IE N+E LA +E+W+NGKP  ++L +++P+ +    Y+A
Sbjct:   33 GEYFSNTSPVNGLVFCRVARSSSQDVELALDAAHNALES--WSTTSAVERSNILLRIADRIESNLETLAIVESWDNGKPIRETLAADLPLTIDHFRYFA 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH_VIBC3 (Aldehyde dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=aldA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYA 697
            G+ F    P    V   VA   ++D++ A+  A  A +   W   +  ERS I+LR AD IE N+E LA +E+W+NGKP  ++L +++P+ +    Y+A
Sbjct:   33 GEYFSNTSPVNGLVFCRVARSSSQDVELALDAAHNALES--WSTTSAVERSNILLRIADRIESNLETLAIVESWDNGKPIRETLAADLPLTIDHFRYFA 129          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
BETB_RHOS11.389e-1237.40Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
ABDH_SALAR1.389e-1237.04Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
BETB_VIBPA1.814e-1232.41Betaine aldehyde dehydrogenase OS=Vibrio parahaemo... [more]
ALDH_AGABI3.094e-1230.58Aldehyde dehydrogenase OS=Agaricus bisporus GN=ald... [more]
BADH_GADCA5.278e-1235.71Betaine aldehyde dehydrogenase OS=Gadus callarias ... [more]
ALDH_DEIRA5.278e-1236.00Aldehyde dehydrogenase OS=Deinococcus radiodurans ... [more]
IOLA_BACHD5.599e-1236.04Methylmalonate semialdehyde dehydrogenase [acylati... [more]
ALDH_STRCO9.002e-1235.29Probable aldehyde dehydrogenase OS=Streptomyces co... [more]
ALDH_VIBCH1.176e-1135.35Aldehyde dehydrogenase OS=Vibrio cholerae GN=aldA ... [more]
ALDH_VIBC31.176e-1135.35Aldehyde dehydrogenase OS=Vibrio cholerae serotype... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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