CK934091

Overview
NameCK934091
Unique NameCK934091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934091_ssr440 microsatellite CK934091_ssr440:440..454. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13239 contig Csv1_Contig13239:155..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF---EEDLDTMLPKCDIVVVNTPL 821
            VT E I+ A  L+++  AGVG D++D+      G+ V     S  ++VAE  +  +L L R        V  G+W      +   +L GKT+G +G GRIG  ++ R K F  +++ +     DP + KE   +      DL+T+L + DIV ++ PL
Sbjct:   55 VTREVIEAAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKN--RFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVY-----DPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPL 205          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15
Identity = 45/155 (29.03%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VT + I+KA+ L+++  AGVG D+ID+      G+ V     ++ +SVAE  +  +L   RN       +  GEW+     ++  +L GKT+G +G GRIG+ +++R K F  N++ +D   +  ++ +  G +  +D++ +  + D + ++ PL
Sbjct:   53 VTRDVIEKAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWD--RKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPY-IPKEVAESMGVELVDDINELCKRADFITLHVPL 204          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF---EEDLDTMLPKCDIVVVNTPL 821
            VT +   K  +L+++  AGVG D+ID++     G+ V      N +S AE     I  L+R+    +  V S EWN    AY   +L GKT+G VG GRIG  + QR + F   +        DP L +E   K        + +L   DI+ V+TPL
Sbjct:   52 VTEDLFNKMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWN--RTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHV-----FDPFLTEERAKKIGVNSRTFEEVLESADIITVHTPL 202          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE--RKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPL 209          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE--RKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPL 209          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.050e-13
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W+     +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWD--RKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPI-ISPEVAASFGVQ-QLPLEEIWPLCDFITVHTPL 209          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 4.050e-13
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE--RKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPL 209          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.289e-13
Identity = 46/157 (29.30%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            + AE  + A  L+++    VG D+ID+      G+ V    G    + A+     ++   R  +     V  G+W VA   +    YD+ G+T+G VG GRIG  + +R K F   +LY+D ++ +   EKE G ++   L+ +L + D V ++ PL
Sbjct:   57 IDAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRRE-DFEKELGVEY-VPLEKLLEESDFVSLHVPL 211          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.907e-13
Identity = 46/160 (28.75%), Postives = 78/160 (48.75%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            +  E    A  L+++    VG D++D+      G+ V         + A+     +L   R  +       SGEW   G+A+       +D+ GKT+G +G GRIG+ + +R K F   +LY+ R +  P+ E+E  A+F + L+ +L + D VV+  PL
Sbjct:   57 IDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPEAEEELKAEF-KPLEELLKESDFVVLAVPL 214          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     ++ L R        +  G+W+     +   +L GKT+G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWD--RKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPI-ISPEVAASFGVQ-QLPLEEIWPLCDFITVHTPL 209          
The following BLAST results are available for this feature:
BLAST of CK934091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SERA_METTH4.327e-1531.65D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_METJA5.651e-1529.03D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_BACSU6.248e-1433.54D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_PANTR3.101e-1330.32D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_HUMAN3.101e-1330.32D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_MOUSE4.050e-1330.32D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_MACFA4.050e-1330.32D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
GYAR_KORCO5.289e-1329.30Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
GYAR_THEGJ6.907e-1328.75Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
SERA_RAT9.021e-1329.68D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934091 ID=CK934091; Name=CK934091; organism=Citrus sinensis; type=EST; length=823bp
GGGGAGTGTGAGTGACAAATTATATAATTGGGAGATGGCCATGAAGAGAG
TAGCTAGCTCTGCAATTAACGCTTTTGCTTCGTCGGGATATCTTCGTTCA
TCGTCGAGGTTTTCTCGACACTATGCTTCTTCTGGAAGAAAGAAGATTGT
TGGGGTGTTCTACAAGGGCAATGAATACGCTTCAATGAATCCCAACTTTC
TTGGTTGTGTGGAGGGAGGCTGTGGTCTGCGTGAATGGCTGGAATCGAAA
GGTCACCAATATATTGTCACTGATGACAAAGAGGGACCAGACTGTGAACT
AGAGAAACATATTCCTGATCTCCACGTCCTCATCTACCCCCTTCCACCCT
GCCTATGTTACGGCGGAAAGGATTAAGAAGGCCAAAAATTTGCAACTGCT
TCTCACTGCTGGAGTTGGCTCTGATCATATTGATCTAAATGCTGCTGCTG
CTGCTGGTTTAACTGTTGCTGAAGTTACTGGAAGCAATGTGGTTTCAGTT
GCTGAGGACGAGCTTATGAGAATCCTTATTCTTGTCCGTAATTTCTTACC
TGGACACCATCAAGTTATCAGTGGGGAATGGAATGTTGCCGGTGTTGCTT
ATAGAGCTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTGGA
CGCATTGGCAAGCTGTTGCTCCAACGACTTAAACCTTTCAATTGTAATCT
CCTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTG
GAGCAAAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATA
GTTGTTGTCAACACCCCTCTAAA
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