CK934091

Overview
NameCK934091
Unique NameCK934091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934091_ssr440 microsatellite CK934091_ssr440:440..454. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13239 contig Csv1_Contig13239:155..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13
Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VT++ I  AK LQ++  AG G D++DL      G+ V      N +S AE     IL L R        +  G+W      +   +L GK +G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWE--RKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPI-IAPEVSASFGVQ-QLPLEEIWPLCDFITVHTPL 209          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++      + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE--RKKFMGTELNGKTLGILGLGRIGREVAIRMQSLGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPL 209          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            VT++ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GK +G +G GRIG+ +  R++ F    + +D + + P++    G + +  L+ + P CD + V+TPL
Sbjct:   59 VTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWE--RKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEQIWPLCDFITVHTPL 209          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 40/143 (27.97%), Postives = 66/143 (46.15%), Query Frame = 3
Query:  393 QLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            +L +T   G +++D++     G+ VA          A   LM  +  +R        +  G+W          D  GK VG +G G IGK   Q++ P  C ++YH+R +++ + EK  GA F    D +L   D++ +N PL
Sbjct:   85 KLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQN--LSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASF-VSFDELLSSSDVISINCPL 224          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 52/172 (30.23%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  309 IFLISTSSSTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV-ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY---HDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 812
            I L+STS         V  E I  A NL+++   G G +++D++      + V     ++  S AE     +L + R    G      +G    A + +R  ++ GKT+G +G G IG  + +R K F+ N+LY   H +V      E+E GAK+  DL+T+L   D V +N
Sbjct:   50 ISLLSTS---------VDKEVIDAANNLKIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRAKAFDMNILYTGPHQKV----DKEREIGAKY-VDLETLLKNADFVTIN 207          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            +  + + +A  L+++    VG D+ID+      G+ V    G    + AE     IL   R  +   H V  GEW      +        +L GKT+G +G GRIG  + +  K F   ++YH R +   ++EKE GA++   L+ +L + DI+ ++ PL
Sbjct:   58 IDCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRSR-KREIEKELGAEY-RSLEDLLRESDILSIHLPL 215          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 818
            V AE +  A  L+++  AGVG D++D++     G+ V     SN+ S AE  L  +L   R        +    W  +  ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD +L + D + V+ P
Sbjct:   55 VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY-VSPARAAQLGIEL-LSLDDLLARADFISVHLP 204          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  357 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 818
            V AE +  A  L+++  AGVG D++D++     G+ V     SN+ S AE  L  +L   R        +    W  +  ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD +L + D + V+ P
Sbjct:   55 VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY-VSPARAAQLGIEL-LSLDDLLARADFISVHLP 204          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: CTBP1_RAT (C-terminal-binding protein 1 OS=Rattus norvegicus GN=Ctbp1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 47/165 (28.48%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  342 FHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            +H   +T E ++K K L++++  G G D+ID+      G+ V  V  ++V   A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L  +L   D V ++  L
Sbjct:   65 YHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GIERALGLQRVSTLQDLLFHSDCVTLHCGL 228          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: CTBP1_MOUSE (C-terminal-binding protein 1 OS=Mus musculus GN=Ctbp1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 47/165 (28.48%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  342 FHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            +H   +T E ++K K L++++  G G D+ID+      G+ V  V  ++V   A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L  +L   D V ++  L
Sbjct:   76 YHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GIERALGLQRVSTLQDLLFHSDCVTLHCGL 239          
The following BLAST results are available for this feature:
BLAST of CK934091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SERA_PIG9.021e-1330.32D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_PONAB2.625e-1229.68D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_BOVIN2.625e-1229.03D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
YGDH_SCHPO1.303e-1127.97Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]
Y606_STAS11.303e-1130.23Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
GYAR_AERPE1.701e-1128.75Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
SERA_MYCTU2.902e-1129.87D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO2.902e-1129.87D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
CTBP1_RAT4.950e-1128.48C-terminal-binding protein 1 OS=Rattus norvegicus ... [more]
CTBP1_MOUSE4.950e-1128.48C-terminal-binding protein 1 OS=Mus musculus GN=Ct... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934091 ID=CK934091; Name=CK934091; organism=Citrus sinensis; type=EST; length=823bp
GGGGAGTGTGAGTGACAAATTATATAATTGGGAGATGGCCATGAAGAGAG
TAGCTAGCTCTGCAATTAACGCTTTTGCTTCGTCGGGATATCTTCGTTCA
TCGTCGAGGTTTTCTCGACACTATGCTTCTTCTGGAAGAAAGAAGATTGT
TGGGGTGTTCTACAAGGGCAATGAATACGCTTCAATGAATCCCAACTTTC
TTGGTTGTGTGGAGGGAGGCTGTGGTCTGCGTGAATGGCTGGAATCGAAA
GGTCACCAATATATTGTCACTGATGACAAAGAGGGACCAGACTGTGAACT
AGAGAAACATATTCCTGATCTCCACGTCCTCATCTACCCCCTTCCACCCT
GCCTATGTTACGGCGGAAAGGATTAAGAAGGCCAAAAATTTGCAACTGCT
TCTCACTGCTGGAGTTGGCTCTGATCATATTGATCTAAATGCTGCTGCTG
CTGCTGGTTTAACTGTTGCTGAAGTTACTGGAAGCAATGTGGTTTCAGTT
GCTGAGGACGAGCTTATGAGAATCCTTATTCTTGTCCGTAATTTCTTACC
TGGACACCATCAAGTTATCAGTGGGGAATGGAATGTTGCCGGTGTTGCTT
ATAGAGCTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTGGA
CGCATTGGCAAGCTGTTGCTCCAACGACTTAAACCTTTCAATTGTAATCT
CCTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTG
GAGCAAAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATA
GTTGTTGTCAACACCCCTCTAAA
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