CK934091

Overview
NameCK934091
Unique NameCK934091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934091_ssr440 microsatellite CK934091_ssr440:440..454. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13239 contig Csv1_Contig13239:155..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: CTBP1_HUMAN (C-terminal-binding protein 1 OS=Homo sapiens GN=CTBP1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 47/165 (28.48%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  342 FHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 821
            +H   +T E ++K K L++++  G G D+ID+      G+ V  V  ++V   A+  L  IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L  +L   D V ++  L
Sbjct:   76 YHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGL 239          
BLAST of CK934091 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 47/169 (27.81%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  309 IFLISTSSSTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH-QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 812
            I L+STS         V  + I  A NL+++   G G ++ID+       + V     ++  + A+  +  IL + R  + G H    +G    A + +R  ++ GKT+G +G G IG  + +R + F+ ++LY    + + + E++ GAK+  DLDT+L   D + +N
Sbjct:   49 ISLLSTS---------VDKDIIDSANNLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKE-EKERDIGAKY-VDLDTLLKNADFITIN 206          
The following BLAST results are available for this feature:
BLAST of CK934091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CTBP1_HUMAN6.465e-1128.48C-terminal-binding protein 1 OS=Homo sapiens GN=CT... [more]
Y1888_STAEQ8.444e-1127.81Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934091 ID=CK934091; Name=CK934091; organism=Citrus sinensis; type=EST; length=823bp
GGGGAGTGTGAGTGACAAATTATATAATTGGGAGATGGCCATGAAGAGAG
TAGCTAGCTCTGCAATTAACGCTTTTGCTTCGTCGGGATATCTTCGTTCA
TCGTCGAGGTTTTCTCGACACTATGCTTCTTCTGGAAGAAAGAAGATTGT
TGGGGTGTTCTACAAGGGCAATGAATACGCTTCAATGAATCCCAACTTTC
TTGGTTGTGTGGAGGGAGGCTGTGGTCTGCGTGAATGGCTGGAATCGAAA
GGTCACCAATATATTGTCACTGATGACAAAGAGGGACCAGACTGTGAACT
AGAGAAACATATTCCTGATCTCCACGTCCTCATCTACCCCCTTCCACCCT
GCCTATGTTACGGCGGAAAGGATTAAGAAGGCCAAAAATTTGCAACTGCT
TCTCACTGCTGGAGTTGGCTCTGATCATATTGATCTAAATGCTGCTGCTG
CTGCTGGTTTAACTGTTGCTGAAGTTACTGGAAGCAATGTGGTTTCAGTT
GCTGAGGACGAGCTTATGAGAATCCTTATTCTTGTCCGTAATTTCTTACC
TGGACACCATCAAGTTATCAGTGGGGAATGGAATGTTGCCGGTGTTGCTT
ATAGAGCTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTGGA
CGCATTGGCAAGCTGTTGCTCCAACGACTTAAACCTTTCAATTGTAATCT
CCTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTG
GAGCAAAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATA
GTTGTTGTCAACACCCCTCTAAA
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