CK934094

Overview
NameCK934094
Unique NameCK934094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934094_ssr61 microsatellite CK934094_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7277 contig Csv1_Contig7277:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.066e-26
Identity = 67/166 (40.36%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPA--GNPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSS-ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 596
            + DFCV     +D     G  C  P +VT +DF F+GL  A        + VT   V   P +N LG+SL R+D    G  P HTHP ASE+L V  G +  GF++S+  N ++ KTL +GD+ +FPQGL+HFQVN G   A+ F   +S NPG+      +F +N
Sbjct:   28 LQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSN 193          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.935e-26
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPAGNPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 593
            + DFCVAD+       G PC  P  VT+DDF  +    +  NT + + + VT   V  FP +N LG+SLAR+D A  GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD+ +FP+ ++HFQ+N   +  A+   + +S NPG+     A+F +
Sbjct:   29 LQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGS 192          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.183e-25
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  108 VNDFCVA-DLKLSDSPAGNPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSS--ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGI 665
            + D+CVA   K      G  C  P +VT+DDF  SGL + GNT   + + V PA +   P +N LG+ +AR+D A GG+IP H HP ASEI+LV+ G +  GF+SS+    T++ K L  GD+ + P GL+ F  N G   A+   +  S NPG      A+F +   +  +++ +   LD   V+ L+ +
Sbjct:   30 LQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPANI---PGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAFALDINIVRYLRKV 217          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.545e-25
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPAGNPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 593
            + DFCVAD+K      G PC  P  V +DDF  +    +  +T + + + VT   V  FP +N LG+SLAR+D A  GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD  +FP+ ++HFQ+N   +  A+   S NS NPG+     A+F +
Sbjct:   29 LQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGS 192          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.018e-25
Identity = 68/188 (36.17%), Postives = 105/188 (55.85%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPAGNPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 659
            + DFCVAD        G  C+ P  VTAD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+
Sbjct:   28 LQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQ 215          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.635e-25
Identity = 69/194 (35.57%), Postives = 102/194 (52.58%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPAGNPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 674
            + DFCVADL             P     DDF+FS  L  AGNT++   +AVT   VA++P  N LG+S+ R+D A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   V FNS +P +      LF +N  +   ++ +   ++   V+ LK    G
Sbjct:   29 LQDFCVADLDGKAVSVNGHMCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFAG 222          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.442e-25
Identity = 68/188 (36.17%), Postives = 104/188 (55.32%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPAGNPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 659
            + DFCVAD+       G  C+ P  V AD F  +        T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FPQGL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+
Sbjct:   28 LQDFCVADMHSPVRVNGFACLNPMEVNADHFFKAAKLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQ 215          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.495e-25
Identity = 64/164 (39.02%), Postives = 93/164 (56.71%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPAGNPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFAN 593
            + DFCVAD+       G  C+ P  V AD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +
Sbjct:   28 LQDFCVADMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGS 191          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.495e-25
Identity = 70/191 (36.65%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPA-GNPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGI 665
            + D+CVA  + +     G  C  P  VT +DF  SGL V GNT     A  T   V + P +N LG+ +AR D A GG+ P HTHP  S+I LV+ G +  GF+SS+    T++ K L  GD+ +FP+GL+HF  N G   A+   +  S +PG  I   A+F +   +  +++ +   LD   VK L+ +
Sbjct:   30 LQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAV 220          
BLAST of CK934094 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.871e-25
Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 3
Query:  108 VNDFCVADLKLSDSPAGNPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPMHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFAN 593
            + DFCVAD        G  C+ P  VTAD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FP GL+HFQ N      A+   + +S NPG+     A+F +
Sbjct:   28 LQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGS 191          
The following BLAST results are available for this feature:
BLAST of CK934094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL19_ARATH4.066e-2640.36Putative germin-like protein subfamily 1 member 9 ... [more]
GL83_ORYSJ6.935e-2638.41Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL13_ARATH1.183e-2536.65Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL84_ORYSJ1.545e-2539.02Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ2.018e-2536.17Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GER3_WHEAT2.635e-2535.57Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL85_ORYSJ3.442e-2536.17Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ4.495e-2539.02Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL14_ARATH4.495e-2536.65Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL89_ORYSJ5.871e-2539.63Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934094 ID=CK934094; Name=CK934094; organism=Citrus sinensis; type=EST; length=810bp
GGGGATAGCCATTATCATCAAAATAACTACACTAAATATTAGTCAAAATG
CTTCACATTCTCTTCTTCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAA
TGCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTC
CCGCCGGCAATCCTTGCGTGCCCCCTGCTATGGTTACCGCTGACGACTTC
GTATTTTCGGGCCTCGGCGTGGCCGGAAACACCACGAGTATTATCAACGC
GGCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTGAATGGCCTCG
GACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATG
CACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCAT
AACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGC
TTAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAA
GTAAATTCCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCC
GAATCCTGGACTCCAAATCACCGATTTCGCTTTATTTGCCAACAACTTGT
CTTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAG
AGGCTCAAGGGTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACA
TTCTTCGTTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTAT
TTGATTGTTGGAATTCACGAGTTAGTATTTTCTCTGTTCTCACTTCCCCT
ATCTTTTCTT
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