CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:83..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 48/107 (44.86%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  262 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            ++EV  + D+ +E++V++S+ P+L++FWAPWCGPC+MIAP ++ELA E+AGKV   K+N DD+     ++G+RSIPT+L  KNG+   + +GA+PK+ L++ +++++
Sbjct:    1 MSEVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVVATQVGALPKTQLANFINQHI 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_RICCN (Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 51/101 (50.50%), Postives = 76/101 (75.25%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V DSS++  V+ S+ PVLV+FWA WCGPC+M+ P I+E++KE  GKV   K+N D++PN  ++YGIRSIPT++ FKNGE+K++ IG   K++L   ++K +
Sbjct:    5 VMDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINKSI 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 50/98 (51.02%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            VT++++++ V+ S+ PVLV F  PWCGPC+M+AP ++E+A EY GKV   K+NTD++P +A++YG+RSIPT L FK GE   +++GA PK+ L++ LD
Sbjct:    6 VTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGEVAANMVGAAPKTRLAAFLD 103          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            VT  SWE+ V+ SE PVLVEF+  WCGPCRM+   I+E+A +YAGK+ C+ LN D+   +A +Y I+++P VL FKNGEK+ESI+G +PK    S +++
Sbjct:   71 VTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIER 169          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 51/104 (49.04%), Postives = 77/104 (74.04%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V  VTDSS++N V+ S+ PV+V+FWA WCGPC+M+ P I+E++KE   KV   K+N D++P   ++YGIRSIPT++ FKNGE+K++ IG   K++L   ++K +
Sbjct:    2 VNNVTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINKSI 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 558
            VTD S+E  V+ S+ PVLV+FWA WC PCRM+ P IEE++K+   KV   K+N D++P I +KYGIRSIPTV+ FKNGE+K++ +G   K++L
Sbjct:    5 VTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQKDTKVGLHQKNSL 97          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 47/100 (47.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:  283 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            TD +++  ++ S+  VLV+FWA WCGPC M+ P IE+LA +Y GK    KLN D++PNIA +YGIRSIPT+L  K G+  + ++GA+PK+ ++  +D+++
Sbjct:    8 TDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 49/104 (47.12%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V  VTD S++N V+ S+ PV+V+FWA WCGPC+M+ P I+E++KE   KV   K+N D++P   ++YG+RSIPT++ FKNGE+K++ IG   K +L   ++K +
Sbjct:    2 VNNVTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQKDTKIGLQQKKSLLDWINKSI 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 48/94 (51.06%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLS 561
            V +S++++ V+ S  PV+V+FWA WCGPC+MIAPA++E+A E AG+V   K+N D++P +A ++G+RSIPT+L FK+GE   +++GA PKS L+
Sbjct:    5 VDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGAAPKSRLA 98          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD S+E  V+ ++ PVLV+FWA WCGPCR IAP++E +A EY  K+   KLN D++P  A KYG+ SIPT+  ++ GE  ++I+GA PK+ +   L+ ++
Sbjct:    8 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 108          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_HAEIN1.386e-2644.86Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO_RICCN4.033e-2650.50Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=... [more]
THIO_STRAU5.268e-2651.02Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
TRXM3_ARATH6.880e-2651.52Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
THIO_RICPR8.986e-2649.04Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_RICBR2.002e-2554.84Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
THIO_CHLLT2.614e-2547.00Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_RICTY7.607e-2547.12Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
THIO1_CORNE7.607e-2551.06Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_STRCO1.298e-2447.52Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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