CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:83..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            +TD S++  V+ ++  +LV+FWA WCGPC+MIAP ++E+A EY GK+   KLN D +P  A KYGIR IPT+L FKNGE   + +GA+ K  L   LD
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLD 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 47/100 (47.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:  283 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            TD +++  +++S+   LV+FWA WCGPC M+ P IEELA +Y GK    KLN D++PN A +YGIRSIPT+L  K G+  + ++GA+PK+ ++  LD+++
Sbjct:    9 TDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKLDEHI 108          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_CHRVI (Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            VTD S+E  V  S +PVLV++WA WCGPC+M AP  +E+A EYAG+V   K N D++PN   +YG R IPT++ F+ GE + + +GAV KS L++ LD
Sbjct:    7 VTDDSFEEEVXKSPDPVLVDYWADWCGPCKMXAPVXDEIADEYAGRVKXAKXNXDENPNTPPRYGXRGIPTLMLFRGGEVEATKVGAVSKSQLTAFLD 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 47/98 (47.96%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            VTD+S+E  V+ ++ PVLV++WA WCGPC+MIAP ++E+A++Y GK+   KLN D++ +   KYG+R IPT++ FK+G  + + +GA+ KS L++ LD
Sbjct:    8 VTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGNVEATKVGALSKSQLAAFLD 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLD 573
            V+D S+E  V+ S  PVLV+FWA WCGPC+MIAP +EE+A EYA ++   K N D++PN   +Y IR IPT+L FK G+ + + +GA+ K+ L++ LD
Sbjct:    8 VSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGKLEATKVGALSKAQLTAFLD 105          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_SHIFL1.298e-2451.02Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY1.298e-2451.02Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI1.298e-2451.02Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI1.298e-2451.02Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL61.298e-2451.02Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO571.298e-2451.02Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
THIO2_CHLTE1.695e-2447.00Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO_CHRVI2.213e-2451.02Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=... [more]
THIO_PSEAE2.891e-2447.96Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
THIO_THIFE1.435e-2350.00Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top