CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:83..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSS 564
            VTD++++  V  S+ PV+V+FWA WCGPCR I PA+EEL+KEYAGKV   K+N D++P      G+R IP +  FKNG+   + +GA PK+ L++
Sbjct:    6 VTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQVVSNKVGAAPKAALAT 100          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 46/105 (43.81%), Postives = 78/105 (74.29%), Query Frame = 1
Query:  268 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            EV   TD+++   V++S+ PVL++FWAPWCGPCRMI+P ++E+A E++GKV   K+N D++     + G+RSIPT++ FKNG+   + +GA+PK+ L++ +++ +
Sbjct:    2 EVLHSTDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGKAVATQVGALPKNQLANFINQNI 106          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTDS +++ + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+GE  + ++G  PK  L+  LDK++
Sbjct:    6 VTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTDS +++ + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+GE  + ++G  PK  L+  LDK++
Sbjct:    6 VTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            V DS +   V+ S+ PV+V+FWAPWCGPCR+IAP +++LA EYAG++   K+NTDD+   A++ GI+ IPT++ FK+G +   ++GA P++      DK
Sbjct:    7 VHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREIFDK 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 48/107 (44.86%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  262 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            +N++  +TD ++E  V++S++  LV+FWA WC PC+++AP +EE++KEY+ KV   KLN +++PN A  Y IRSIPT+L F N E   + +GAV K  L   LD+ +
Sbjct:    1 MNKIIELTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVLATKVGAVSKLELKEFLDENI 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_RHOSH2.447e-2349.47Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]
THIO_PASMU4.174e-2343.81Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_STAES9.299e-2347.52Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ9.299e-2347.52Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_CHLAA1.214e-2246.46Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO_BUCAI1.586e-2244.86Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]
THIO_STAAW2.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU2.071e-2246.53Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS2.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR2.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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