CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:83..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+ +++ V S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A KY + SIPT++ FK+G+  + ++G  PK  L+  LDK++
Sbjct:    6 VTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 46/101 (45.54%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTDS++++ + S  N  LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A K+ + SIPT++ FK+GE  + ++G  PK  L+  ++K++
Sbjct:    6 VTDSNFDDNIQSGVN--LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTDS+++  + S     LV+FWA WCGPC+MIAP +EELA +Y GK    KL+ D++P+ A K+ + SIPT++ FK+GE  + ++G  PK  L+  LDK++
Sbjct:    6 VTDSNFDENIQSGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.872e-22
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:  283 TDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            TD +++  V+ +E PVLV+FWA WC PC+ IAP +EEL+ EYAGKV   K++     + A KY IR+IP +L FK+GE     +GA P+S L++ +D+ +
Sbjct:    9 TDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGEVVAQQVGAAPRSKLAAFIDQNI 108          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 558
            VTD ++E  V+ SE PVLV+FWA WCGPCR IAP++E +  E+ G++   KLN D +P  A KYG+ SIPT+  ++ GE  ++I+GA PK+ L
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVVKTIVGAKPKAAL 99          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_STAAN2.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB2.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA82.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA32.071e-2246.53Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_STAS12.705e-2245.54Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STAHJ3.533e-2246.53Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO2_CORNE7.872e-2246.00Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_STRCL1.343e-2150.54Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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