CK934109

Overview
NameCK934109
Unique NameCK934109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 2
Query:  506 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQ  VTGKG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 2
Query:  506 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQ  VTGKG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 239          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 2
Query:  506 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQ  VTGKG
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 88          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 2
Query:  506 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQ  VTGKG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.747e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 2
Query:  506 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQ  VTGKG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.983e-40
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 2
Query:  485 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQ  VTGKG
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 96          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.104e-29
Identity = 88/231 (38.10%), Postives = 115/231 (49.78%), Query Frame = 2
Query:   62 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 748
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF VQ
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 208          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.586e-27
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  506 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ Q  VTG+G
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEG 94          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 76/194 (39.18%), Postives = 102/194 (52.58%), Query Frame = 2
Query:  212 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q   TG G
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 246          
BLAST of CK934109 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 79/207 (38.16%), Postives = 105/207 (50.72%), Query Frame = 2
Query:  173 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQXXVTGKG 769
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q   TG G
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 246          
The following BLAST results are available for this feature:
BLAST of CK934109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2F_SOLLC3.747e-4294.32Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.747e-4294.32Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.747e-4294.32Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.747e-4294.32Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.747e-4294.32Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA5.983e-4085.42Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU8.104e-2938.10Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB21_EUGGR7.586e-2769.23Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB12_SOLLC1.690e-2639.18Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY4.917e-2638.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_D03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934109 ID=CK934109; Name=CK934109; organism=Citrus sinensis; type=EST; length=771bp
GGGGAATTCACCTCTCAACACTCGAACACTAGAGCTCACCAACAACTCCG
ATCATTGTAAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTC
GGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGG
CCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCC
CGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAG
CCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACAC
TGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCG
AAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTC
CCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTT
CAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGA
ACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAG
GTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCT
CGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGG
GTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATC
AAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGN
NNNTGTCACCGGCAAGGGACC
back to top