CK934120 | Citrus Genome Database

Overview


Name	CK934120
Unique Name	CK934120
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	851

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK934120_ssr69	microsatellite	CK934120_ssr69:69..78.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+   ++   IR+++  A  D   +++G
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILG 120

HSP 2 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSA 152

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+   ++   IR+++  A  D   +++G
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILG 120

HSP 2 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSA 152

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+   ++   IR+++  A  D   +++G
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILG 120

HSP 2 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSA 152

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF++
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98

HSP 2 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +I+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSA 152

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF++
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98

HSP 2 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +I+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSA 152

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF++
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98

HSP 2 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +I+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSA 152

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF++
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98

HSP 2 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +I+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSA 152

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.591e-28
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF++
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.001e-28
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+C L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF +
Sbjct:    8 LFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFEN 98

[Close]

BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.045e-27
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 2

Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF +
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFEN 98

The following BLAST results are available for this feature:

BLAST of CK934120 vs. ExPASy Swiss-Prot

BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330


Match Name	E-value	Identity	Description
RAB8A_HUMAN	1.612e-28	58.62	Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8...	[more]
RAB8A_CANFA	1.612e-28	58.62	Ras-related protein Rab-8A OS=Canis familiaris GN=...	[more]
RAB8A_BOVIN	1.612e-28	58.62	Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ...	[more]
RAB8B_RAT	3.591e-28	69.23	Ras-related protein Rab-8B OS=Rattus norvegicus GN...	[more]
RAB8B_PONAB	3.591e-28	69.23	Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8...	[more]
RAB8B_MOUSE	3.591e-28	69.23	Ras-related protein Rab-8B OS=Mus musculus GN=Rab8...	[more]
RAB8B_HUMAN	3.591e-28	69.23	Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8...	[more]
RAB8B_BOVIN	3.591e-28	69.23	Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ...	[more]
RAB8A_CHICK	8.001e-28	69.23	Ras-related protein Rab-8A OS=Gallus gallus GN=RAB...	[more]
RAB13_RAT	1.045e-27	64.84	Ras-related protein Rab-13 OS=Rattus norvegicus GN...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A