CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFN 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFN 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.047e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF +
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTA 112          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.047e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF +
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTA 112          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCS 439
            L K++LIGDSGVGKS LL R                    RTIE++ K+IK QIWDTAGQER+R IT+AYYRGA+G L+VYD++  SS+  NC+
Sbjct:   13 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSY-ENCN 105          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESF 110          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS L+LR                  ++ ++ +DG R+KL IWDTAGQERFRT+T +YYRGA G++ VYDVT  SSF
Sbjct:   12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSF 99          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB2A_CHICK6.140e-2054.44Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA6.140e-2054.44Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB15_RAT6.140e-2052.81Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN6.140e-2052.81Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN6.140e-2052.81Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB3D_RAT1.047e-1952.75GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3D_MOUSE1.047e-1952.75Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
YPT32_YEAST1.368e-1953.19GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB3D_HUMAN1.368e-1953.93Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB18_CAEEL1.368e-1951.14Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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