CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS L+LR                  ++ ++ +DG R+KL IWDTAGQERFRT+T +YYRGA G++ VYDVT  SSF
Sbjct:   12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSF 99          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L +LLLIGDSGVGK+CLL R                  K++TI++DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSY 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.333e-19
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KL+L+GD+ VGK+C++ R                   ++T+E+ GKR+KLQIWDTAGQERFRTIT +YYR A G +L YD+T  SSF S
Sbjct:   18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 108          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDSGVGKS LL R                    R++++DGK +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  S+F +
Sbjct:   14 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFEN 104          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDSGVGKS LL R                    RT+++DGK +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F +
Sbjct:   13 LFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFEN 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.980e-19
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F +
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFEN 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F++
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F++
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L K ++IGD+GVGKSCLLL+                    R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.789e-19
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KL+LIGDSGVGKS LL R                    +++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F +
Sbjct:   13 LFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFET 103          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB18_CAEBR1.368e-1951.14Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RAB15_MOUSE1.368e-1951.69Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB43_HUMAN2.333e-1950.55Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RIC2_ORYSJ3.047e-1953.85Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH3.047e-1953.85Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE3.980e-1953.85Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB2BV_BETVU5.198e-1950.55Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA5.198e-1950.55Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB2A_MAIZE5.198e-1953.33Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RB11E_LOTJA6.789e-1953.85Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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