CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N
Sbjct:   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N
Sbjct:   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N
Sbjct:   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N
Sbjct:   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N
Sbjct:   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N
Sbjct:   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KL+LIGDSGVGKS LL R                    +T+ +D K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F +
Sbjct:   13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFEN 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LL YD+T   +F++
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDN 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L K++LIG++GVGK+CL+ R                   I+T+E++G+++KLQIWDTAGQERFR+IT +YYR A  ++L YD+T E SF
Sbjct:    9 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF 97          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L K++LIG++GVGK+CL+ R                   I+T+E++G+++KLQIWDTAGQERFR+IT +YYR A  ++L YD+T E SF
Sbjct:    9 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF 97          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB14_RAT1.512e-1850.00Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.512e-1850.00Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.512e-1850.00Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE1.512e-1850.00Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.512e-1850.00Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.512e-1850.00Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RB11D_LOTJA1.975e-1852.75Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC1.975e-1849.45Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB30_MOUSE1.975e-1848.31Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.975e-1848.31Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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