CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            +++++IG  GVGK+ L+ R                  KI+T+EL GK+I+LQIWDTAGQERF +IT+AYYR A GI+LVYD+T + +F+
Sbjct:    7 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K+++IGDS VGKS LL R                  + +++ +DGK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T  S+F +
Sbjct:   12 LFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFEN 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDS VGK+C++ R                   +R + ++GK++K+Q+WDTAGQERFRTIT +YYR A G ++ YD+T   SF S
Sbjct:   15 LFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFES 105          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K++LIGDS VGKS LL R                  + RT+ +D + +K QIWDTAGQER+R +T+AYYRGA+G +LVYD+T   SF+
Sbjct:   18 VFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFD 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KL+LIGDSGVGKS LL R                    R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G L+VYD+T   +F +
Sbjct:   14 LFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFEN 104          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K++LIGDS VGK+C++                     +R++++DGK++K+Q+WDTAGQERFRTIT +YYR A   ++ YD+T  S+F S
Sbjct:   17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFES 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KL+LIGDSGVGKS LL R                    +++ +D K IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   ++ +
Sbjct:   13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYEN 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            + K+LLIGDS VGK+ LLLR                   K + I +DG+   LQIWDTAGQERFRTIT+++YRGA G+L+ YDVTD+ ++N+
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNN 97          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K L+IG +G GKSCLL +                    R + + GK +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N+
Sbjct:    8 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K ++IGD GVGKSCLL +                    R ++++ K+IKLQIWDTAGQERFR +T +YYRGA G LLVYD+T   ++N
Sbjct:    8 IFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYN 97          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB12_CANFA7.506e-1848.31Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
ARA4_ARATH7.506e-1848.35Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB19_XENTR9.803e-1845.05Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RGP1_ORYSJ1.280e-1747.78Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11B_TOBAC1.280e-1751.65Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAB19_HUMAN1.280e-1743.96Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
YPT3_NICPL1.672e-1751.65Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RABG1_DICDI1.672e-1750.00Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB4B_DANRE1.672e-1747.25Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB14_DICDI1.672e-1747.78Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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