CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934120_ssr69 microsatellite CK934120_ssr69:69..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.045e-27
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF +
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFEN 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFN+
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.328e-27
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+CLL R                  KIRT+ELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGI+ VYD+T+E SF++
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDN 98          

HSP 2 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +I+NWIRNIE+HAS +V ++++GNK DM+E KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIKNWIRNIEEHASSDVERMILGNKCDMNE-KRQVSKERGEKLAIDYGIKFLETSA 152          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB13_MESAU1.045e-2764.84Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
YPT1_PHYIN1.365e-2769.23Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1_DISOM1.365e-2769.23Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT1.365e-2769.23Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG1.365e-2769.23Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE1.365e-2769.23Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST1.365e-2769.23Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1A_HUMAN1.365e-2769.23Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.365e-2769.23Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB8_DISOM2.328e-2767.03Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
back to top