CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.379e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTI--ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L K++L+G+SGVGKS +L+R                   ++TI  +  G+ +KLQ+WDTAGQERF++IT  +YRG+ G+++VYDVTD  SF
Sbjct:    6 LYKIILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSF 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            + K++LIGDS VGK+ +L R                  + RT+ +  K +K QIWDTAGQER+R +T+AYYRGA+G +LVYD+T   +F+
Sbjct:   15 VFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFD 104          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K+LLIGDS VGK+ ++ R                  K++ +++DGK++ L IWDTAGQE+FR + ++YYRGA GI+L YDVT   SF++
Sbjct:    8 KVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDN 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSL 463
            L+K++L G SG GKSCLL R                    R I +      KRIKLQIWDTAGQE+FR++   YYRGA G +LVYDVT++ SF    S    IR++
Sbjct:    9 LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAM 114          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RASEF_DANRE (RAS and EF-hand domain-containing protein OS=Danio rerio GN=rasef PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +L+L GD+G GKS  LLR                  +I+ + +DG++  LQIWDTAGQERFR+I  +Y+R A G+LL+YDVT ESSF
Sbjct:  469 RLVLAGDAGSGKSSFLLRLSLNEFRGDIQTTLGVDFQIKKMLVDGEKTNLQIWDTAGQERFRSIARSYFRKAHGVLLLYDVTSESSF 555          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB33B_HUMAN (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.554e-15
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNS------NCSLHFIIRSL 463
            + K+++IGDS VGK+CL  R                  + R +E+DG+RIK+Q+WDTAGQERFR ++   YYR    ++ VYD+T+ +SF+S       C  H +   +
Sbjct:   33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDI 141          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNS 430
            + K+++IGDS VGK+CL  R                  + R +E+DG+RIK+Q+WDTAGQERFR ++   YYR    ++ VYD+T+ +SF+S
Sbjct:   33 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS 124          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K +L GDSGVGK+ +L R                  KI+T+ ++GK IKLQIWDTAG++RFR +  ++YRG  G+++VYDVTD+ SF +
Sbjct:    8 LFKFVLAGDSGVGKTSILFRITDDTFTETHITIGIEF-KIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFEN 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB40C_MOUSE (Ras-related protein Rab-40C OS=Mus musculus GN=Rab40c PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L+K LL+GDS VGK  +L                    K  TI LDG+R+KL++WDT+GQ RF TI  +Y RGA GILLVYD+T+  SF+
Sbjct:   14 LLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFD 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB40C_HUMAN (Ras-related protein Rab-40C OS=Homo sapiens GN=RAB40C PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L+K LL+GDS VGK  +L                    K  TI LDG+R+KL++WDT+GQ RF TI  +Y RGA GILLVYD+T+  SF+
Sbjct:   14 LLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFD 103          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RABC_DICDI5.379e-1645.05Ras-related protein RabC OS=Dictyostelium discoide... [more]
RB11C_TOBAC7.025e-1644.44Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB18_DICDI7.025e-1644.94Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
YPT4_SCHPO1.565e-1545.28GTP-binding protein ypt4 OS=Schizosaccharomyces po... [more]
RASEF_DANRE1.565e-1548.28RAS and EF-hand domain-containing protein OS=Danio... [more]
RB33B_HUMAN4.554e-1537.61Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
RB33B_PONAB5.947e-1542.39Ras-related protein Rab-33B OS=Pongo abelii GN=RAB... [more]
RABF1_DICDI5.947e-1546.15Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RB40C_MOUSE7.767e-1547.78Ras-related protein Rab-40C OS=Mus musculus GN=Rab... [more]
RB40C_HUMAN7.767e-1547.78Ras-related protein Rab-40C OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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