CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB33A_MOUSE (Ras-related protein Rab-33A OS=Mus musculus GN=Rab33a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNS 430
            + K+++IGDS VGK+CL  R                  + +T+E++G++IK+Q+WDTAGQERFR ++   YYR    ++ VYDVT  +SF +
Sbjct:   36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTN 127          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB33A_HUMAN (Ras-related protein Rab-33A OS=Homo sapiens GN=RAB33A PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNS 430
            + K+++IGDS VGK+CL  R                  + +T+E++G++IK+Q+WDTAGQERFR ++   YYR    ++ VYDVT  +SF +
Sbjct:   36 IFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWDTAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTN 127          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            + K++LIG+SGVGK+ LL R                    RT+ L    IK QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++
Sbjct:   12 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTY 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RASEF_XENTR (RAS and EF-hand domain-containing protein OS=Xenopus tropicalis GN=rasef PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L GD+ VGKS  L+R                  +++T+ +DG+   LQ+WDTAGQERFR+I  +Y+R A G+LL+YDVT E SF
Sbjct:  524 KIVLAGDAAVGKSSFLMRLCKNEFRGNTSATLGVDFQMKTLVVDGEPTILQLWDTAGQERFRSIAKSYFRRADGVLLLYDVTCEKSF 610          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            + K++LIG+SGVGK+ LL R                    RT+ L    +K QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++
Sbjct:   12 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTY 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            + K++LIG+SGVGK+ LL R                    RT+ L    +K QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++
Sbjct:   12 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTY 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            + K++LIG+SGVGK+ LL R                    RT+ L    +K QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++
Sbjct:   12 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTY 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L+K++L+GD GVGKS L+ R                    R +E+DG+ + LQIWDTAGQERF+++ T +YRGA   LL + V D  SF +
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN 97          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L+K++L+GD GVGKS L+ R                    R +E+DG+ + LQIWDTAGQERF+++ T +YRGA   LL + V D  SF +
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN 97          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L+K++L+GD GVGKS L+ R                    R +E+DG+ + LQIWDTAGQERF+++ T +YRGA   LL + V D  SF +
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN 97          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RB33A_MOUSE3.855e-1440.22Ras-related protein Rab-33A OS=Mus musculus GN=Rab... [more]
RB33A_HUMAN3.855e-1440.22Ras-related protein Rab-33A OS=Homo sapiens GN=RAB... [more]
RAB25_BOVIN3.855e-1446.07Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RASEF_XENTR5.035e-1444.83RAS and EF-hand domain-containing protein OS=Xenop... [more]
RAB25_MOUSE5.035e-1444.94Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_HUMAN5.035e-1444.94Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT6.576e-1444.94Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB9B_PONAB1.122e-1342.86Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_MOUSE1.122e-1342.86Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN1.122e-1342.86Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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