CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 108          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 108          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 108          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 108          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 108          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.465e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESF 108          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--SNCSLHFIIRS 460
            L+K++++GDSGVGK+ L+ +                    + IE+D K++ +QIWDTAGQERF+++ +A+YRGA   +LV+DV +  SF+   N    FII++
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQA 110          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB40L_HUMAN (Ras-related protein Rab-40A-like OS=Homo sapiens GN=RAB40AL PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L+K LL+GD  VGKS +L                    K  TI LDG+R+KL++WDT+GQ RF TI  +Y RGA G++LVYD+ +  SF
Sbjct:   14 LLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB40A_HUMAN (Ras-related protein Rab-40A OS=Homo sapiens GN=RAB40A PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L+K LL+GD  VGKS +L                    K  TI LDG+R+KL++WDT+GQ RF TI  +Y RGA G++LVYD+ +  SF
Sbjct:   14 LLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSF 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB33_CIOIN (Putative Ras-related protein Rab-33 OS=Ciona intestinalis GN=COS41.2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSF 424
            + K+++IGDS VGK+CL  R                  + RT+++DG++IKLQ+WDTAGQERFR ++   YYR    ++  YDVT   SF
Sbjct:   15 VFKIIVIGDSDVGKTCLTYRFCTGKFPEKTEATIGVDFRERTLDIDGEQIKLQLWDTAGQERFRKSMVPHYYRNVHAVVFTYDVTKGRSF 104          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB5A_PIG1.465e-1342.53Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE1.465e-1342.53Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.465e-1342.53Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.465e-1342.53Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.465e-1342.53Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN1.465e-1342.53Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
YPTC5_CHLRE1.913e-1338.83GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]
RB40L_HUMAN1.913e-1344.94Ras-related protein Rab-40A-like OS=Homo sapiens G... [more]
RB40A_HUMAN1.913e-1344.94Ras-related protein Rab-40A OS=Homo sapiens GN=RAB... [more]
RAB33_CIOIN1.913e-1342.22Putative Ras-related protein Rab-33 OS=Ciona intes... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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