CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13
Identity = 39/103 (37.86%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--SNCSLHFIIRS 460
            ++K++++GDSGVGK+ L+ +                    + IE+D K++ +QIWDTAGQERF+++ +A+YRGA   +LV+DV +  SF+   N    FII++
Sbjct:    8 VLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQA 110          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT53_YEAST (GTP-binding protein YPT53 OS=Saccharomyces cerevisiae GN=YPT53 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            IK++L+G+S VGKS ++LR                    + I  DGK IK +IWDTAGQERF  +   YYR A   L+V+DVT+E SF
Sbjct:   13 IKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSF 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27B_RAT (Ras-related protein Rab-27B OS=Rattus norvegicus GN=Rab27b PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GKRIK--LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIKLL +GDSGVGK+  L R                  + + +  D        GK  K  LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF
Sbjct:    9 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GKRIK--LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIKLL +GDSGVGK+  L R                  + + +  D        GK  K  LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF
Sbjct:    9 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIK L +GDSGVGK+ +L +                  + + +             G+RI LQ+WDTAGQERFR++TTA++R AMG LL++D+T+E SF
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIK L +GDSGVGK+ +L +                  + + +             G+RI LQ+WDTAGQERFR++TTA++R AMG LL++D+T+E SF
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIK L +GDSGVGK+ +L +                  + + +             G+RI LQ+WDTAGQERFR++TTA++R AMG LL++D+T+E SF
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIK L +GDSGVGK+ +L +                  + + +             G+RI LQ+WDTAGQERFR++TTA++R AMG LL++D+T+E SF
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIK L +GDSGVGK+ +L +                  + + +             G+RI LQ+WDTAGQERFR++TTA++R AMG LL++D+T+E SF
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RASEF_CAEEL (RAS and EF-hand domain-containing protein homolog OS=Caenorhabditis elegans GN=tag-312 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            ++++ GD+ VGKS  ++R                   ++T+ +DG+ + LQ+WDTAGQERFR++  +Y+R A G +LVYDV  E SF
Sbjct:  463 RIVMCGDAAVGKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVNVDGRNVALQLWDTAGQERFRSLCKSYFRRADGAILVYDVCAEQSF 549          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
YPTV5_VOLCA2.499e-1337.86GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]
YPT53_YEAST3.263e-1344.32GTP-binding protein YPT53 OS=Saccharomyces cerevis... [more]
RB27B_RAT3.263e-1343.43Ras-related protein Rab-27B OS=Rattus norvegicus G... [more]
RB27B_MOUSE3.263e-1343.43Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]
RB27A_RAT3.263e-1341.41Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]
RB27A_PIG3.263e-1341.41Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RB27A_MOUSE3.263e-1341.41Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RB27A_HUMAN3.263e-1341.41Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]
RB27A_CANFA3.263e-1341.41Ras-related protein Rab-27A OS=Canis familiaris GN... [more]
RASEF_CAEEL3.263e-1339.08RAS and EF-hand domain-containing protein homolog ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
back to top