CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RASEF_CAEBR (RAS and EF-hand domain-containing protein homolog OS=Caenorhabditis briggsae GN=tag-312 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            ++++ GD+ VGKS  ++R                   ++T+ +DG+ + LQ+WDTAGQERFR++  +Y+R A G +LVYDV  E SF
Sbjct:  441 RIVMCGDAAVGKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVNVDGRNVALQLWDTAGQERFRSLCKSYFRRADGAILVYDVCAEHSF 527          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABJ_DICDI (Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            K++L+G S VGK+ L LR                    RTI ++G +IK  IWD+AGQ+RFR++ T YYRGA   +LV+D+T + +F+
Sbjct:   11 KVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFD 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K ++ G   VGKS LLL+                  + R+I +D  +IKL+IWDTAGQE FR+ITT YYRGA   LL YD+T   SF
Sbjct:    6 LKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSF 93          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--SNCSLHFI 451
            L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQERFR++ T +YRG+   LL + V D  SF   SN    FI
Sbjct:    7 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 106          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--SNCSLHFI 451
            L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQERFR++ T +YRG+   LL + V D  SF   SN    FI
Sbjct:    7 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 106          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB21_RAT (Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   YYR + G +LVYDVTDE SF
Sbjct:   19 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSF 105          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB21_MOUSE (Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   YYR + G +LVYDVTDE SF
Sbjct:   19 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSF 105          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            K++L+G+  VGK+ L+LR                    + + + GKRI+L IWDTAGQER+  +   YYR + G ++VYD+TDE SF+
Sbjct:   18 KVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFH 105          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK----------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIKLL +GDSGVGK+  L R                  + + +  + +          ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF
Sbjct:    9 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GKRIK--LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            LIKLL +GDSGVGK+  L R                  + + +  +        GK  K  LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF
Sbjct:    9 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSF 107          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RASEF_CAEBR4.262e-1339.08RAS and EF-hand domain-containing protein homolog ... [more]
RABJ_DICDI5.567e-1340.91Ras-related protein RabJ OS=Dictyostelium discoide... [more]
RABQ_DICDI7.270e-1345.45Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB9A_RAT7.270e-1341.00Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB9A_MOUSE7.270e-1341.00Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB21_RAT7.270e-1342.53Ras-related protein Rab-21 OS=Rattus norvegicus GN... [more]
RAB21_MOUSE7.270e-1342.53Ras-related protein Rab-21 OS=Mus musculus GN=Rab2... [more]
RAB21_GEOCY7.270e-1339.77Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RB27B_HUMAN9.495e-1339.39Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RB27B_BOVIN9.495e-1342.42Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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