CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--SNCSLHFI 451
            L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQERFR++ T +YRG+   LL + V D  SF   SN    FI
Sbjct:    7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 106          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--SNCSLHFI 451
            L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQERFR++ T +YRG+   LL + V D  SF   SN    FI
Sbjct:    7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 106          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB21_HUMAN (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   YYR + G +LVYD+TDE SF
Sbjct:   21 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 107          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB21_CANFA (Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   YYR + G +LVYD+TDE SF
Sbjct:   19 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 105          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB21_BOVIN (Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQERF  +   YYR + G +LVYD+TDE SF
Sbjct:   18 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF 104          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIK-LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            ++K++++GDSGVGK+ L+ R                    + + +DG ++  +Q+WDTAGQERF+++  A+YRGA   +LVYDVT+ SSF +
Sbjct:    8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFEN 99          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR-TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            K++LIG SGVGKS ++ +                    +  I  +GK +KL IWDTAGQERFR+IT  YY  ++G L+V+DVTD  SF+
Sbjct:   15 KIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFD 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLH 445
            L+K++++GDSGVGK+ L+ +                    + +++D + + LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF S  + H
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWH 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+  +F
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTF 109          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+  +F
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTF 109          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB9A_HUMAN9.495e-1341.00Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9A_CANFA9.495e-1341.00Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB21_HUMAN9.495e-1341.38Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2... [more]
RAB21_CANFA9.495e-1341.38Ras-related protein Rab-21 OS=Canis familiaris GN=... [more]
RAB21_BOVIN9.495e-1341.38Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 ... [more]
YPT7_YEAST1.240e-1239.13GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]
RABL_MIMIV1.620e-1243.82Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
RAB7_ARATH1.620e-1238.54Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB5C_PONAB1.620e-1240.23Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE1.620e-1240.23Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
back to top