CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+G++ VGKS L+LR                    +T+ L+   +K +IWDTAGQER+ T+   YYRGA   ++VYD+  E SF
Sbjct:   11 KLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSF 97          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 36/103 (34.95%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS--NCSLHFIIRS 460
            L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQERF++++ A+YRGA   +LV+DVT  ++F +  +  L F+I++
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQA 110          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+GD G GKS L+LR                    +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++V+D+T+++SF
Sbjct:   12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASF 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAGQERFR +   YYRG+   ++VYD+T E +F++
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFST 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAGQERFR +   YYRG+   ++VYD+T E +F++
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFST 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L+K++++GDSGVGK+ L+ +                    + +++D + + LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF++
Sbjct:    8 LLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDT 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB21_DICDI (Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            K++L+G+  VGK+ ++ R                    + I + GKRI L IWDTAGQERF  +   YYRG+ G L+VYD+TD  SF
Sbjct:    9 KVVLLGEGCVGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTAGQERFHALGPIYYRGSQGALVVYDITDNDSF 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            KL+L+GD G GKS L++R                     T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T   SF
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSF 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            +KL+++G  GVGK+ LL +                    + I LD   +KLQIWDT GQERFR++ + +Y+G+ G +L +DVTD  SF +
Sbjct:    9 LKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEA 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--SNCSLHFIIRS 460
            L+K++++GDSGVGK+ L+ +                    + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+  +N    F+I++
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQA 110          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB5A_DICDI2.763e-1240.23Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB7A_RABIT4.712e-1234.95Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]
RHA1_ARATH6.155e-1237.93Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RB22A_MOUSE6.155e-1236.67Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
RB22A_HUMAN6.155e-1236.67Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RAB7_SOYBN6.155e-1238.46Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
RAB21_DICDI6.155e-1241.38Ras-related protein Rab-21 OS=Dictyostelium discoi... [more]
RHN1_NICPL1.050e-1137.93Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB7B_MOUSE1.050e-1138.89Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB7_PEA1.371e-1135.92Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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