CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934120_ssr69 microsatellite CK934120_ssr69:69..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB34_HUMAN (Ras-related protein Rab-34 OS=Homo sapiens GN=RAB34 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS 421
            K++++GD  VGK+CL+ R                  ++   E+ G    LQ+WDTAGQERF+ I + YYRGA  I++V+++ D +S
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVAS 139          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            +K+ L+GD+GVGKS ++ R                    +T+    +  K  IWDTAGQERF ++   YYRG+   ++VYD+T + SF++
Sbjct:    6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHT 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            +K+ L+GD+GVGKS ++ R                    +T+    +  K  IWDTAGQERF ++   YYRG+   ++VYD+T + SF++
Sbjct:    6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHT 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            IK++++G+  VGKS ++ R                    R I+++ + ++L +WDTAGQE F  IT AYYRGA   +LV+  TD  SF +
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEA 99          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            IK++++G+  VGKS ++ R                    R I+++ + ++L +WDTAGQE F  IT AYYRGA   +LV+  TD  SF +
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEA 99          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K++L+G  GVGK+C + R                    + + ++   ++LQIWDTAGQERFR++   YYR A   +L YDVT  +SF++
Sbjct:    7 KIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSASCGILCYDVTSRASFDA 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABY_DICDI (Ras-related protein RabY OS=Dictyostelium discoideum GN=rabY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE--RFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L K+++IGD   GK+CL+ R                  K++TI +D K IKLQIWD+   E  RF     + YR A G L+VYD T+E+SF++
Sbjct:   11 LFKIVIIGDRKTGKTCLMNRFVENTWSEEYRQTNLLHFKVKTIYIDCKIIKLQIWDSQADENFRFNNNNLSNYRSASGFLVVYDCTNENSFSN 103          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L+K++++GDSGVGK+ L+ +                    + ++ + +   LQIWDTAGQERF+++  A+YRGA   +L YDV    SF S
Sbjct:    8 LLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFES 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS 421
            KL+L+GDS VGKS L+LR                    +T+ +D    +KL+IWDTAGQER++++   YYR A   ++VYD+T  +S
Sbjct:   16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAAS 102          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+ L+GD+GVGKS ++ R                    +T+    +  K  IWDTAGQERF ++   YYRG+   ++VYD+T + SF
Sbjct:    6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF 93          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB34_HUMAN5.210e-1137.21Ras-related protein Rab-34 OS=Homo sapiens GN=RAB3... [more]
RAB31_RAT5.210e-1135.56Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE5.210e-1135.56Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB23_MOUSE5.210e-1136.67Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RAB23_HUMAN5.210e-1136.67Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]
RYL2_YARLI6.805e-1137.08Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
RABY_DICDI6.805e-1139.78Ras-related protein RabY OS=Dictyostelium discoide... [more]
RAB7_MESCR6.805e-1137.36Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
YPT5_SCHPO8.887e-1140.23GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
RAB31_HUMAN8.887e-1136.36Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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