CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934120_ssr69 microsatellite CK934120_ssr69:69..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.717e-25
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF    ++   +R++D  A  D   +L+G
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFE---NISKWLRNIDEHANEDVERMLLG 121          

HSP 2 Score: 70.0922 bits (170), Expect = 1.791e-11
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +I  W+RNI++HA+++V ++L+GNK DMD+ KR VP  KG  +A E+GI+FFETSA
Sbjct:   99 NISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  164 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            K+LLIGDSGVGKSCLLLR                  KI+T+ LDGK IKLQIWDTAGQERFRTIT++YYRGA GI+LVYD TD+ SF +
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTN 100          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.339e-25
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDS VGKSC LLR                  KIRT+E++GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD  SFN+
Sbjct:    8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNN 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 59/91 (64.84%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDS VGKSCLLLR                  KIRTIE DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD T+  SFN+
Sbjct:    8 LFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNN 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 59/89 (66.29%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            L KLLLIGDSGVGKSCLLLR                  KI+TIELDGK IKLQIWDTAGQERF TIT++YYRGA G L+VYDVTD+ S+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESY 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF +
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFEN 99          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-NSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG  G+++VYDVT   SF N    LH I ++ D     D   IL+G
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVG 119          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-NSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG  G+++VYDVT   SF N    LH I ++ D     D   IL+G
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVG 119          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-NSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG  G+++VYDVT   SF N    LH I ++ D     D   IL+G
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVG 119          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.252e-21
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YDVT+E SFNS
Sbjct:   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNS 111          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RAB10_CANFA3.717e-2553.45Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB1D_DICDI4.854e-2564.04Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
YPTM1_MAIZE6.339e-2561.54GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RABD1_ARATH8.280e-2564.84Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1C_HUMAN8.280e-2566.29Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB10_RAT8.280e-2561.54Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB35_RAT4.543e-2352.14Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE4.543e-2352.14Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN4.543e-2352.14Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB3_DROME4.252e-2154.95Ras-related protein Rab-3 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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