CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934120_ssr69 microsatellite CK934120_ssr69:69..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.616e-20
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS LLLR                  K++TI +DG R KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTF 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.600e-20
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            +K+L+IG+SGVGKS LLLR                  K++T+ ++G + KL IWDTAGQERFRT+T +YYRGA G++LVYDV+ + SFN
Sbjct:   10 LKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFN 98          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 427
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 95          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 96          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  161 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 424
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 96          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RB18B_DANRE1.616e-2054.55Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB18A_LYMST3.600e-2051.69Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
YPTV4_VOLCA4.701e-2054.44GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE4.701e-2054.44GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB18_RAT4.701e-2053.41Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB4.701e-2053.41Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE4.701e-2053.41Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN4.701e-2053.41Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_CHICK4.701e-2053.41Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_BOVIN4.701e-2053.41Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
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