CK934124

Overview
NameCK934124
Unique NameCK934124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934124 vs. ExPASy Swiss-Prot
Match: COPZ2_MOUSE (Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.951e-22
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  380 LFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 688
            L+V G   ENEL+L +VL   FD++  +LR NV+K+                VDGG+ILE+D   +  KV   + D G  L+EQ+++Q L +A+E +  SLLK
Sbjct:  105 LYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSG--LTEQSVAQVLQSAKEQIKWSLLK 205          

HSP 2 Score: 58.9214 bits (141), Expect = 2.951e-22
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  174 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFLSLG 395
            +IK + +LD++G+R+  KYY + +P+   +  FEK VF KT    +RTE+EIA L G  IVYK   D+    +G
Sbjct:   40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTIVYKSSIDIFLYVVG 109          
BLAST of CK934124 vs. ExPASy Swiss-Prot
Match: COPZ2_HUMAN (Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.096e-21
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  380 LFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 688
            L+V G   ENEL+L +VL   F+++  +LR NV+K+                VDGG+ILE+D   +  KV   + D G  L+EQ+++Q L +A+E +  SLLK
Sbjct:  110 LYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGG--LTEQSVAQVLQSAKEQIKWSLLK 210          

HSP 2 Score: 58.151 bits (139), Expect = 4.096e-21
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  174 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFLSLG 395
            +IK + +LD++G+R+  KYY + +P+   +  FEK VF KT    +RTE+EIA   G  IVYK   DL    +G
Sbjct:   45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTIVYKNSIDLFLYVVG 114          
BLAST of CK934124 vs. ExPASy Swiss-Prot
Match: COPZ_CAEEL (Probable coatomer subunit zeta OS=Caenorhabditis elegans GN=F59E10.3 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.094e-17
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  174 SIKNILLLDSEGKRVAVKYYS-NDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFLSLG 395
            SIK I++LD +G RV  KYY    + T   ++AFEK++F+KT +    T A+I +L+G   +Y+   DL+F  LG
Sbjct:   13 SIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSR---NTSADILLLDGVTCLYRSNVDLYFYVLG 84          

HSP 2 Score: 55.4546 bits (132), Expect = 1.094e-17
Identity = 38/106 (35.85%), Postives = 52/106 (49.06%), Query Frame = 2
Query:  383 FVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA----LATAREHLTRSLLK 688
            +V G   ENEL L   L   +DAV ++LR NV+KK                 D GII+ETDA  +  + A  S +V    S+Q++SQ     + +A E    SLLK
Sbjct:   81 YVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQRTALKSDEVS--FSDQSVSQIGFSFMKSANEQFKWSLLK 184          
BLAST of CK934124 vs. ExPASy Swiss-Prot
Match: COPZA_DICDI (Probable coatomer subunit zeta-A OS=Dictyostelium discoideum GN=copza PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 8.169e-14
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  174 SIKNILLLDS-EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFLSLG 395
            ++ +  +LDS +G+RV  KYY+ND+ T   ++AFEK VF KT K N     EI +L+  ++VYK   ++    +G
Sbjct:    7 TVTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFEKKVFDKTSKVN--FGGEITLLDNYLVVYKSFSNIIIYMVG 79          

HSP 2 Score: 44.2838 bits (103), Expect = 8.169e-14
Identity = 27/98 (27.55%), Postives = 51/98 (52.04%), Query Frame = 2
Query:  380 LFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHL 670
            +++ G +++NE+ L  VL  F D +  L     ++KK                +DGGII+E+D+ VIA +V   + D      +++I++A+ + +E L
Sbjct:   75 IYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTLDEIIDGGIIMESDSAVIADRVGIKAPDNDD--LDESINKAVTSVKEQL 170          
BLAST of CK934124 vs. ExPASy Swiss-Prot
Match: COPZ_SCHPO (Probable coatomer subunit zeta OS=Schizosaccharomyces pombe GN=ret3 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 1.519e-11
Identity = 30/106 (28.30%), Postives = 50/106 (47.17%), Query Frame = 2
Query:  383 FVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKV----ASHSVDVGAPLSEQTISQALATAREHLTRSLLK 688
            ++ GG +ENE++L   L+   DA+ LL +   DK+                +D G+ILET+  +IA +V     S +  + +   E     +   ARE +T  +LK
Sbjct:   82 YIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKAREKITERILK 187          

HSP 2 Score: 42.743 bits (99), Expect = 1.519e-11
Identity = 30/86 (34.88%), Postives = 43/86 (50.00%), Query Frame = 3
Query:  165 TCPSIKNILLLDSEGKRVAVKYYS-------NDWPTNSAKE--AFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFLSLG 395
            T  ++   L+LDS GKR+  KYY+            NS KE   FEK +F KT K    T+ +I   +G ++V   V D+ F  +G
Sbjct:    4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWK----TQNDILTYDGKLVVMLTVMDVIFYIVG 85          
The following BLAST results are available for this feature:
BLAST of CK934124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COPZ2_MOUSE2.951e-2238.83Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 P... [more]
COPZ2_HUMAN4.096e-2137.86Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 P... [more]
COPZ_CAEEL1.094e-1741.33Probable coatomer subunit zeta OS=Caenorhabditis e... [more]
COPZA_DICDI8.169e-1438.67Probable coatomer subunit zeta-A OS=Dictyostelium ... [more]
COPZ_SCHPO1.519e-1128.30Probable coatomer subunit zeta OS=Schizosaccharomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_B03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934124 ID=CK934124; Name=CK934124; organism=Citrus sinensis; type=EST; length=847bp
GGGATATTTGAAGACTTAGTATTGTCATGTTGTTCGCTCGGTTAATCAAT
AAACGTCCATTACGTTCTTCTCTGTATTGTAATCTTCCTTGACTCTCGGG
AGTCTCAACGCTCGAAATTAATTGACTGCAGACGACCAAGTTTAATCGAA
CAACAAGCATGGATACTTGTCCGTCCATAAAGAATATCCTTCTCCTGGAT
TCTGAAGGGAAACGTGTAGCAGTCAAGTATTATTCAAACGACTGGCCAAC
CAACAGTGCAAAGGAAGCTTTTGAGAAAGCTGTGTTTACCAAGACCCAGA
AAACAAATGCACGGACCGAAGCGGAGATAGCTATGCTTGAGGGCAACGTT
ATTGTTTACAAGTTTGTTCAAGACCTTCACTTTTTGTCACTGGGGGTGAA
GATGAAAATGAGCTGATCTTAGCCACGGTTCTTCAGGGATTTTTTGATGC
AGTTGGTCTTCTTCTTAGAGGCAATGTGGACAAGAAGGAGGCTCTTGAGA
ACTTGGATCTTATCTTGTTGTGCCTTGATGAAATTGTTGATGGAGGTATC
ATTCTGGAAACTGATGCAAATGTCATTGCTGGAAAGGTTGCAAGCCATAG
TGTGGATGTTGGAGCTCCTTTGTCTGAGCAGACAATTAGTCAAGCATTGG
CTACTGCCCGTGAACATTTAACAAGATCCCTTCTTAAGTGATGATTGCAC
CAGAATAAAAAGGAGAGAGCAGAGTTCTCGTATTTTCTCAGTTTTTACCA
TACATGATTTACCGGTTAATGAGCATCTCCAATTTTGCTTTCTTAATATT
AGTAGATGATGCTGCCATTTGTGCTGTCAGAAGTGTTGTCCCTCGGG
back to top