CK934125

Overview
NameCK934125
Unique NameCK934125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934125_ssr169 microsatellite CK934125_ssr169:169..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1423..1921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH1_ARATH (Adenosylhomocysteinase 1 OS=Arabidopsis thaliana GN=SAHH1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.652e-12
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+L+K+Q+DY+S+  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVALLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 485
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_XANOP (Adenosylhomocysteinase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVY+LPKHLDE+V            T LTK+QADY+ V   GPYKP HYRY
Sbjct:  428 EKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVDVAGPYKPDHYRY 480
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_XANOM (Adenosylhomocysteinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVY+LPKHLDE+V            T LTK+QADY+ V   GPYKP HYRY
Sbjct:  428 EKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVDVAGPYKPDHYRY 480
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_XANCP (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVY+LPKHLDE+V            T LTK+QADY+ V   GPYKP HYRY
Sbjct:  428 EKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVDVAGPYKPDHYRY 480
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_XANC8 (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVY+LPKHLDE+V            T LTK+QADY+ V   GPYKP HYRY
Sbjct:  428 EKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVDVAGPYKPDHYRY 480
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_XANAC (Adenosylhomocysteinase OS=Xanthomonas axonopodis pv. citri GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVY+LPKHLDE+V            T LTK+QADY+ V   GPYKP HYRY
Sbjct:  428 EKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVDVAGPYKPDHYRY 480
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_DESVM (Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=ahcY PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 32/53 (60.38%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            E+KVY+LPK LDE+V            T LTKEQADYI V  DGPYKP HYRY
Sbjct:  427 ERKVYILPKKLDEQVARLHLARLGVTLTTLTKEQADYIGVPVDGPYKPGHYRY 479
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_XANC5 (Adenosylhomocysteinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=ahcY PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVY+LPKHLDE+V            T LTK+QADY+ V  +GP+KP HYRY
Sbjct:  428 EKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVPVEGPFKPDHYRY 480
[Close]
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_PELCD (Adenosylhomocysteinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            E KVYVLPK LDEKV            TR+T++QADY+ V  DGPYKP HYRY
Sbjct:  423 ENKVYVLPKQLDEKVARLHLANLGVKLTRMTEKQADYLGVPVDGPYKPEHYRY 475
The following BLAST results are available for this feature:
BLAST of CK934125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SAHH1_ARATH6.652e-1258.49Adenosylhomocysteinase 1 OS=Arabidopsis thaliana G... [more]
SAHH_XANOP5.631e-1158.49Adenosylhomocysteinase OS=Xanthomonas oryzae pv. o... [more]
SAHH_XANOM5.631e-1158.49Adenosylhomocysteinase OS=Xanthomonas oryzae pv. o... [more]
SAHH_XANCP5.631e-1158.49Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]
SAHH_XANC85.631e-1158.49Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]
SAHH_XANAC5.631e-1158.49Adenosylhomocysteinase OS=Xanthomonas axonopodis p... [more]
SAHH_DESVM5.631e-1160.38Adenosylhomocysteinase OS=Desulfovibrio vulgaris (... [more]
SAHH_XANC57.354e-1156.60Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]
SAHH_PELCD7.354e-1158.49Adenosylhomocysteinase OS=Pelobacter carbinolicus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934125 ID=CK934125; Name=CK934125; organism=Citrus sinensis; type=EST; length=505bp
GGGGAGAAGAAGGTGTACGTTCTGCCCAAGCACCTCGATGAAAAGGTTGC
TGCTCTTCACCTTGGCAAACTTGGAGCTAAGCTCACCAGGCTCACCAAGG
AGCAGGCTGACTACATCAGTGTGTCCGCCGATGGTCCTTACAAGCCTCTT
CACTACAGGTACTAAGTGGAAGAAGAAGAAGAAGAAGAAGAAGAGTGAAT
GTTTTGAGGGAAAGAAACAAAATATTTGGCCGGCTTGATTGTTTTCAATG
ATGATCTGTAGTAGGATGTTAGGTTTAAATTTCGTAGTAGTGTGTGTTTG
GGTGGTGGGAAAGTTGGAGGAAAGAAACGGATTTGTTTCCGTTGATTGAA
GACCATTTGGGATTTGAATAAGGTTTTGGATGGGGCCGTGTTGGATTATT
TTGTATTTGGTGCAGTTTTAAGTTTTGCTTGCTTTGCTGCATCTTGTTAT
CCTTATTGTTTACTGATGAATGATTATAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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