CK934130

Overview
NameCK934130
Unique NameCK934130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7816 contig Csv1_Contig7816:224..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FAD2L_MOUSE (Fatty acid desaturase 2-like protein OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 53/178 (29.78%), Postives = 80/178 (44.94%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQDFEVSEISK------DYRRLYIEFAKQGMFEKK-----QHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            +E++ H++  D W+ I  KVY+VT+WA +HPGG   L + AGQD TDAF A H   G    YL  L  G    +    E +K      D+R L        MF         H+A   +  ++   ++  +G     S W   +    LL     Q +++ HD GH  +    K+N +
Sbjct:   68 QEIQRHSQEADQWLVIDRKVYNVTDWAGKHPGGRRVLNHYAGQDATDAFRAMHLDLGMVKLYLKPLLIGELSPEEPSQEKNKNAQLVEDFRELRKTLEAMNMFSANLRFFFLHLAQILILEISAWLILHHFG-----SSWLVTILISFLLTVSQAQCSFLQHDLGHLSMFKKSKWNHL 240          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.884e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEVSEISKDYRRLYIE 266
            +E+  HN+  DLWI + GKVY++T+W   HPGG+  LL  AG+D T+ F +YHP T     DK ++   ++ +E+  IS      Y+E
Sbjct:   18 DEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMT-----DKHYS--LIKQYEIGYISSYEHPKYVE 98          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 52/191 (27.23%), Postives = 88/191 (46.07%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCES----VWAHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES    + ++ G+G         +L     Q+ ++ HD GH  V     +N +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHV 196          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS3_MOUSE (Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 43/175 (24.57%), Postives = 83/175 (47.43%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQ 500
            E++R H+   D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G    +       + +++ +D+R L        +FE      +  L  +  M ++    +      W + + + ++L     Q   + HD GH  + T  ++N +AQ
Sbjct:   30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQ 204          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 3
Query:    6 ELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP 164
            EL  HN   D W+++ GKVYD+T W   HPGG   LL  AG+DVT+ F +YHP
Sbjct:   20 ELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHP 72          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.608e-11
Identity = 45/175 (25.71%), Postives = 82/175 (46.86%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDFEV-SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLG-SGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQ 500
            E++R H++  D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G        QD  + +++ +D+R L+       +F+      +  L  +  M V+    +      W     +  +L     QS  + HD GH  +     +N +AQ
Sbjct:   26 EQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQAAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQ 200          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.566e-11
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYFVQDFEVSEISKDYRRLYI 263
            EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   +DK F G      E+   S    R Y+
Sbjct:   11 EEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIG------EIDSSSVPATRTYV 92          
The following BLAST results are available for this feature:
BLAST of CK934130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FAD2L_MOUSE2.974e-1229.78Fatty acid desaturase 2-like protein OS=Mus muscul... [more]
FAD5B_DICDI3.884e-1239.77Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
FADS2_MOUSE6.625e-1227.23Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 P... [more]
FADS3_MOUSE3.288e-1124.57Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 P... [more]
FAD5A_DICDI3.288e-1152.83Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
FADS3_HUMAN5.608e-1125.71Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 P... [more]
CYB51_ARATH9.566e-1142.05Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934130 ID=CK934130; Name=CK934130; organism=Citrus sinensis; type=EST; length=510bp
CTGAAGAGCTTAGAACCCACAACAAGGCAGAAGATTTGTGGATCTCTATA
CAGGGGAAAGTTTACGACGTTACAGAATGGGCAAAACAACATCCTGGCGG
CGACGTTCCGCTCTTGAATTTGGCTGGCCAAGATGTAACCGATGCGTTTA
TAGCGTATCATCCAGGAACCGCTTGGCAATATCTTGATAAACTTTTTACA
GGCTATTTTGTTCAAGATTTCGAAGTATCTGAAATCTCAAAAGATTACAG
GAGACTGTACATTGAGTTTGCCAAACAGGGTATGTTTGAAAAGAAACAAC
ACGTGGCATCCTGTGCCCTTACATGTGTAGCATTGATGTTTGTTGTTGTG
GTTTATGGCGTTTTGTGCTGTGAGAGCGTCTGGGCTCATTTGGGTTCAGG
CATGTTGTTGGGGTTTCTTTGGATTCAAAGTGCTTATGTTGGTCACGATT
CCGGGCATTATCAGGTTATGACAAGTCCTAAGTTTAACAAAATTGCTCAG
CTTATTTCAG
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