CK934147

Overview
NameCK934147
Unique NameCK934147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934147_ssr98 microsatellite CK934147_ssr98:98..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1661 contig Csv1_Contig1661:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.993e-69
Identity = 124/156 (79.49%), Postives = 139/156 (89.10%), Query Frame = 3 
Query:  342 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            +A+RFIKCVTVGDGAVGKTCMLI YT N FPTDY+PTVFDNFSANV VDGS VNLGLWDTAGQEDY+RLRPLSYRGADVFIL+FSLIS+ASYENV KKW+PELR +APGVP++LVGTKLDLR+D+ +  DHP +  ITT  GEELRKLIG+  YIE
Sbjct:    6 AATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDRAYLADHPASSIITTEQGEELRKLIGAVAYIE 161
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.137e-68
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 3 
Query:  345 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            A++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PELR +AP VPI+LVGTKLDLRD + +  DHP A  ITTA GEELRK IG+  YIE
Sbjct:    4 ATKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIE 158
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.644e-68
Identity = 125/157 (79.62%), Postives = 136/157 (86.62%), Query Frame = 3 
Query:  339 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKLDLRDDK +  DH     IT+  GEELRK IG+  YIE
Sbjct:    1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIE 155
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.627e-68
Identity = 123/156 (78.85%), Postives = 139/156 (89.10%), Query Frame = 3 
Query:  342 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            +A+ FIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNF+ANV+VDG TVNLGLWDTAGQEDYNR+RPLSYRGADVFILAFSLIS+ S+EN+AKKW+PELRHYAP VPI+LVGTK DLRD+ QF  ++PGA  I    G+ELRK IG+  YIE
Sbjct:   14 TATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIE 169
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.698e-53
Identity = 100/153 (65.36%), Postives = 117/153 (76.47%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  + K IG+  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.698e-53
Identity = 100/153 (65.36%), Postives = 117/153 (76.47%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  + K IG+  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.698e-53
Identity = 100/153 (65.36%), Postives = 117/153 (76.47%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  + K IG+  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1_CANFA (Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.698e-53
Identity = 100/153 (65.36%), Postives = 117/153 (76.47%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  + K IG+  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.698e-53
Identity = 100/153 (65.36%), Postives = 117/153 (76.47%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  + K IG+  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.492e-52
Identity = 101/153 (66.01%), Postives = 115/153 (75.16%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  L K I S  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLE 156
The following BLAST results are available for this feature:
BLAST of CK934147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_ORYSJ2.993e-6979.49Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC2_ORYSJ1.137e-6879.35Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC7_ARATH5.644e-6879.62Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]
RAC9_ARATH9.627e-6878.85Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC1_RAT6.698e-5365.36Ras-related C3 botulinum toxin substrate 1 OS=Ratt... [more]
RAC1_MOUSE6.698e-5365.36Ras-related C3 botulinum toxin substrate 1 OS=Mus ... [more]
RAC1_HUMAN6.698e-5365.36Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
RAC1_CANFA6.698e-5365.36Ras-related C3 botulinum toxin substrate 1 OS=Cani... [more]
RAC1_BOVIN6.698e-5365.36Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RAC2_HUMAN1.492e-5266.01Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934147 ID=CK934147; Name=CK934147; organism=Citrus sinensis; type=EST; length=814bp
GGGGAACCGCAAAGCGATTTCTTTCCCCTTCTCTTTCCTCTCTCATTGGC
CATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCGCTGCTC
TCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTACC
TTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCCGT
TGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTGTG
GCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTCGG
AATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGTCG
AGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACTTG
CATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCCAA
CTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGGTC
AACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTGAG
ACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACTGA
TTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAACTG
AGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTAGA
TCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACCAA
TTACTACAGCTCANGGAGAGGAACTGAGGAAGCTGATTGGATCTCNNNCA
TACATCGAANNNAG
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