CK934147

Overview
NameCK934147
Unique NameCK934147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934147_ssr98 microsatellite CK934147_ssr98:98..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1661 contig Csv1_Contig1661:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.492e-52
Identity = 101/153 (66.01%), Postives = 115/153 (75.16%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  L K I S  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.949e-52
Identity = 101/153 (66.01%), Postives = 115/153 (75.16%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  L K I S  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.324e-52
Identity = 99/153 (64.71%), Postives = 117/153 (76.47%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK     +      PIT   G  + + IGS  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.324e-52
Identity = 99/153 (64.71%), Postives = 117/153 (76.47%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK     +      PIT   G  + + IGS  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.342e-52
Identity = 98/153 (64.05%), Postives = 117/153 (76.47%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE+RH+ P VPIILVGTKLDLRDDKQ    +      PIT   G  + K I +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.650e-51
Identity = 97/153 (63.40%), Postives = 116/153 (75.82%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK     +      PIT   G  + K IG+  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.675e-51
Identity = 98/153 (64.05%), Postives = 115/153 (75.16%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV   W P++RH+ P  PIIL+GTKLDLRDDK+    +      PIT   G  L K I S  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.182e-49
Identity = 95/153 (62.09%), Postives = 118/153 (77.12%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +SYENV+ KW PE+ H+AP VPIILVGTK+D+R+DK  Q  +      P++   G    K I +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPEVFHHAPNVPIILVGTKMDMREDKETQDRLKEKKLYPVSYEQGLLKMKEINAFKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.182e-49
Identity = 96/153 (62.75%), Postives = 117/153 (76.47%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +S+ENV  KW PE+ H+AP VPIILVGTKLD+R+DK  Q  +      PI+   G    K I +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.544e-49
Identity = 94/153 (61.44%), Postives = 117/153 (76.47%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S AS+ENV  KW PE+ H+AP VPIILVGTKLD+R+D+  Q  +      P++   G    K I +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLE 156          
The following BLAST results are available for this feature:
BLAST of CK934147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_BOVIN1.492e-5266.01Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC2_MOUSE1.949e-5266.01Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE3.324e-5264.71Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN3.324e-5264.71Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
RAC2_DROME4.342e-5264.05Ras-related protein Rac2 OS=Drosophila melanogaste... [more]
RAC1_DROME1.650e-5163.40Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RAC2_CAVPO3.675e-5164.05Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RAC1C_DICDI1.182e-4962.09Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RAC1A_DICDI1.182e-4962.75Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RAC1B_DICDI1.544e-4961.44Rho-related protein rac1B OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934147 ID=CK934147; Name=CK934147; organism=Citrus sinensis; type=EST; length=814bp
GGGGAACCGCAAAGCGATTTCTTTCCCCTTCTCTTTCCTCTCTCATTGGC
CATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCGCTGCTC
TCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTACC
TTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCCGT
TGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTGTG
GCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTCGG
AATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGTCG
AGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACTTG
CATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCCAA
CTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGGTC
AACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTGAG
ACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACTGA
TTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAACTG
AGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTAGA
TCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACCAA
TTACTACAGCTCANGGAGAGGAACTGAGGAAGCTGATTGGATCTCNNNCA
TACATCGAANNNAG
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